{"$update": {"798": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "429": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "36193", "40727", "36310", "35960", "36189", "35920", "35935"]}}}, "3257": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "150"}}}}}}, "345": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36193", "35951", "41239", "35920", "36296"]}}}, "342": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "36526"]}}}, "811": {"$update": {"model_sequences": {"$update": {"sequence": {"5840": {"dna_sequence": {"partial": "0", "sequence": "ATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTAAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATAGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGCAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAA", "fmax": "961", "accession": "NG_050256.1", "fmin": "100", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Enterobacteriaceae", "NCBI_taxonomy_id": "543", "NCBI_taxonomy_cvterm_id": "40532"}, "protein_sequence": {"accession": "WP_047028173.1", "sequence": "MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW"}}}}}}}, "2859": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2858": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2914": {"$update": {"model_sequences": {"$update": {"sequence": {"5874": {"dna_sequence": {"partial": "0", "sequence": "TTGGCTGAGGCTACGACGAACACCACCACCATCATCGCACGCGCCGACCAGCATGATATTGATCTGCACAAGGCGTCGGACCGTGTGAATTTCGGCTCCATCCGCGAGCCCATTGATGTACCCTACCTGTTGGGTGTACAGACTGACAGCTTTGACTGGCTCATCGGCAACGAGCGCTGGCAGAAGCGAGTCCAGGAGGATCTGGAGAACGGCACCAACACCGTGCCCCACACCTCCGGTCTTGACGAGGTCTTCCAGGAGATCTCCCCGATCGAGAACTTCGCTCAGACCATGAGCCTGACCTTCTCCGATCCGTACTTCGAAGAACCGCGCCACACCGTGCAGGAATGCAAGGAGAAGGATTACACCTACTCCGCGCCGCTGTACGTGAACGCCGAATTCGAGAACGGCGACACCGGCGAAATCAAGTCCCAGACCGTGTTCATGGGCGATTTCCCGCTGCAGACCCCGCACGGCACCTTCATCATCGGTGGTACCGAGCGAGTGATCGTGTCCCAGCTCGTGCGTTCCCCGGGCGTGTACTTCGACCGTTCCCAGGACCGTACCTCCGATAAGGAAGTCTTCGGCGCGAAGATCATCCCGAGCCGTGGCGCATGGCTCGAGTTCGAGATCGACAAGCGCGACGTCCTCGGCGTGCGCGTGGACCGTAAGCGCAAGCAGTCCGCCATCGTGTTCCTCATGGCCATCGGCATGACCAAGGATGAAATTGCCGACGCCTTCAAGGACTACCCGCTGGTCATGGACGCTCTCGCCAAGGAGACCGTGCAGACCCAGGACGAGGCCCTGACCGACCTGTACCGCAAGATCCGTCCGGCCGACACCCCGACTCCGGAAGCCGGCAAGAACCTGCTGGACTCCTTCTACTTCAACACCAAGCGTTACGATCTGGCCCGCGTCGGCCGTTACAAGATCAACCGCAAGCTTGGTCTGGAAAAGGACGTCAACGACCGCAGCCTGTCCCGCGAGGACATCATCGCCACCATCAAGTACTTGGTCACCCTGCATGCGGGCGAGACCAAGTTCCCGGGCAAGCGCGACGGCCAGGACGTTGACCTGCGCGTGGACGTCGACGATATCGACCACTTCGGCAACCGTCGTATCCGCCAGGTCGGCGAGCTGATCCAGAACCAGCTGCGCACCGGTCTGAGCCGTATGGAGCGTGTGGTCCGCGAACGTATGACCACCCAGGATCCCGAGGCCATCACCCCGCAGTCCCTGATCAACATCCGTCCGGTGAACGCCACCATCAAGGAGTTCTTCGGAACCTCCCAGCTGTCCCAGTTCATGGATCAGAACAACCCGCTGGCTGGCGTGACCAACAAGCGTCGTCTGTCCGCTCTGGGCCCCGGTGGCCTGTCCCGCGACCGCGCCTCCATGGAAGTGCGAGACGTGCACCCGTCCCATTTCGGCCGTATGTGCCCGATCGAGTCTCCTGAAGGCCCGAACATCGGTCTGATCGGCTCCCTGGCAACCTTCGGTCGCATCAACCCGTTCGGTTTCATCGAGACCCCGTACCGCAAGGTCGTCAACGGCCACGTCACCGATGAAGTCGAGTACATGACCGCTGACCGCGATGCCGAGCACGTCATCGCCCAGGCCAACCAGGAGCTCGACGAGAACGGCAACTTCGTCAAGAAGCAGGCTCTTGCCCGAGTCGGCGAAGAGGAAGCGGTCGATGTGCCGGTCAGCTCCGTCGATTACATGGACGTCTCCCCGCGTCAGATGGTTTCCGTCGGCGCCTCCCTGATTCCGTTCCTGGAGCACGATGAGGGCCACCGAGCGCTGATGGGCACCAACATGCAGCGTCAGGCCGTGCCGCTGATCGAATCCGAGCGTCCGCTCGTGGGCACCGGCGCCGAATGGCGCGCCGCCGTCGATTCCGGCGACGTCATCCTGGCCGAGAAGCCGGGCGTGGTGACCTACGTGTCCGCCGACATCATCCGTACCATGAACGACGATGGCACCACCAGCTCCTACAAGCTGGCCAAATTCCAGCGTTCCAACCAGACCACCTGCTACAACCAGGTCCCGCTCATCCACGACGGTGAACGCGTGGAAGCCGGCACCGTGCTGGCCGATGGTCCGGCAACCCAGAAGGGCGAGATGGCACTGGGCAAGAACCTGCTCATCGCCTTCATGCCGTGGAACGGCTACAACTACGAGGATGCTGTGATCATCTCCCAGCGCCTTGTGCAGGACGACACCCTGAGCTCCATCCACATCGAGGAGTACGAGATCGATGCCCGTGAAACCAAGCTGGGCGCCGAAGAGATCACCCGCGACCTGCCGAACGTCGGCGAGGACGCGGTGGCCAACCTCGACGAGCGTGGCATCATCCGCATCGGCGCCGAAGTCGAAGCCGGCGACATCCTGGTCGGCAAGGTCACCCCGAAGGGCGAGACCGAGCTGACTCCGGAAGAGCGCCTGCTGCGCGCCATCTTCGGTGAGAAGAGCCGCGAAGTGCGTGACACCTCGCTGCGCGTGCCTCACGGCGAGACCGGCACCGTCATCGCGGTCAAGGAAATCACCCGCGAGGACGCCGAGGAAGACGGCGACGAACTGCCGAACGGCGTGAACCAGATGATTCGCGTCTACATCGCACAGCACCGTAAGATCACCCAGGGCGACAAGCTCTCCGGCCGTCACGGCAACAAGGGCGTCATCTCCCGCATCCTGCCGGAAGAGGACATGCCGTTCCTCGCCGACGGTACTCCGGTGGACATCATGCTGAACCCGCTGGGCGTGCCTTCTCGAATGAACCTTGGCCAGGTGCTGGAACTGCACCTCGGCTGGATCGCGCACGCTGGCTGGGACATCTCCCTGGATCCGGATGCCGAGGCCGCTTGGAAGAAGTACGTGCCGCAGGGCGCCGAAAAGGGCGCTCCGGGCACTCCGGTGGCCACCCCGGTGTTCGACGGCGTCCGTCCGGAAACCATCAAGGGCCTGCTCAGCTGCACCCTTCCGGACCGCGACGGCAACAAGCTCGTCGGCCCCGACGGCAAGGCGACCCTGTTCGACGGCCGTACCGGCGAACCGTTCCCGAAGCCGATCTCCGTGGGCTACATGTACATGCTGAAGCTGCACCACCTGGTCGACGACAAGATCCACGCCCGCTCCACCGGCCCGTACTCCATGATCACCCAGCAGCCGCTGGGCGGCAAGGCTCAGTTCGGTGGCCAGCGCTTCGGCGAGATGGAAGTGTGGGCCCTCGAGGCCTACGGTGCCGCCTACACGCTGCACGAAATGATGACCACCAAGTCCGATGACGTCGACGGCCGCGTGCGCGTCTACGGCGCCATCGTGAAGGGCGAGAACCTGCCGCCGGCAGGCATCCCGGAGTCCTTCAAGGTGCTGCTTAAGGAAATGCAGTCCCTGTCCCTGAATGTCGAAGTGCTCAACGCCGACGGCGTGGCTATCGACATGAAGGAAGAGGACGACGATCCGTCCACATCCTCCGATGATCTGGGCTTCAACATTGGTGCGCGTCCTGACGCTGCCGCCAAGGAAGATCAGGTTGCCGAGGAACCCGAATTCCAGTGA", "fmax": "1670624", "accession": "NC_008618.1", "fmin": "1667063", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Bifidobacterium adolescentis", "NCBI_taxonomy_id": "1680", "NCBI_taxonomy_cvterm_id": "42564"}, "protein_sequence": {"accession": "WP_041777404.1", "sequence": "MAEATTNTTTIIARADQHDIDLHKASDRVNFGSIREPIDVPYLLGVQTDSFDWLIGNERWQKRVQEDLENGTNTVPHTSGLDEVFQEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEKDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRSQDRTSDKEVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRKRKQSAIVFLMAIGMTKDEIADAFKDYPLVMDALAKETVQTQDEALTDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRYKINRKLGLEKDVNDRSLSREDIIATIKYLVTLHAGETKFPGKRDGQDVDLRVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDPEAITPQSLINIRPVNATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVVNGHVTDEVEYMTADRDAEHVIAQANQELDENGNFVKKQALARVGEEEAVDVPVSSVDYMDVSPRQMVSVGASLIPFLEHDEGHRALMGTNMQRQAVPLIESERPLVGTGAEWRAAVDSGDVILAEKPGVVTYVSADIIRTMNDDGTTSSYKLAKFQRSNQTTCYNQVPLIHDGERVEAGTVLADGPATQKGEMALGKNLLIAFMPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTVIAVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRILPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDISLDPDAEAAWKKYVPQGAEKGAPGTPVATPVFDGVRPETIKGLLSCTLPDRDGNKLVGPDGKATLFDGRTGEPFPKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGENLPPAGIPESFKVLLKEMQSLSLNVEVLNADGVAIDMKEEDDDPSTSSDDLGFNIGARPDAAAKEDQVAEEPEFQ"}}}}}}}, "2853": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2852": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2855": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2854": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "710": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "150"}}}}}}, "3337": {"$update": {"ARO_category": {"$delete": ["36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2317": {"$update": {"model_sequences": {"$update": {"sequence": {"5880": {"dna_sequence": {"partial": "0", "sequence": "GTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGCGCAGGTATTCAACATGATGTGCGATCAGGATGTACAATTTTTCAGCGGAATTTGTGCCATTAACCAGTTTATCCCGTGGTGA", "fmax": "1908766", "accession": "NC_000913.3", "fmin": "1908622", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli str. K-12 substr. MG1655", "NCBI_taxonomy_id": "511145", "NCBI_taxonomy_cvterm_id": "36849"}, "protein_sequence": {"accession": "NP_416340.1", "sequence": "MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQFIPW"}}}}}, "ARO_category": {"$delete": ["36017", "36193", "37014", "36189", "35951", "41239", "35920", "36296"]}}}, "1067": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "35960", "36189", "35923", "35935"]}}}, "1665": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "36193", "40727", "36310", "35935"]}}}, "1664": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "36193", "40727", "35960", "35923", "35935"]}}}, "593": {"$update": {"ARO_category": {"$delete": ["36189", "35935", "36526"]}}}, "592": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "597": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "1126": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "450"}}}}}}, "276": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "279": {"$update": {"model_sequences": {"$update": {"sequence": {"5885": {"dna_sequence": {"partial": "1", "sequence": "GGTTAAAAAATCACTGCGTCAGTTCACGCTGATGGCGACGGCAACCGTCACGCTGTTGTTAGGAAGTGTGCCGCTGTATGCGCAAACGGCGGACGTACAGCAAAAACTTGCCGAATTAGAGCGGCAGTCGGGAGGCAGACTGGGTGTGGCATTGATTAACACAGCAGATAATTCGCAAATACTTTATCGTGCTGATGAGCGCTTTGCGATGTGCAGCACCAGTAAAGTGATGGCCGCGGCCGCGGTGCTGAAGAAAAGTGAAAGCGAACCGAATCTGTTAAATCAGCGAGTTGAGATCAAAAAATCTGACCTTGTTAACTATAATCCGATTGCGGAAAAGCACGTCAATGGGACGATGTCACTGGCTGAGCTTAGCGCGGCCGCGCTACAGTACAGCGATAACGTGGCGATGAATAAGCTGATTGCTCACGTTGGCGGCCCGGCTAGCGTCACCGCGTTCGCCCGACAGCTGGGAGACGAAACGTTCCGTCTCGACCGTACCGAGCCGACGTTAAACACCGCCATTCCGGGCGATCCGCGTGATACCACTTCACCTCGGGCAATGGCGCAAACTCTGCGGAATCTGACGCTGGGTAAAGCATTGGGCGACAGCCAACGGGCGCAGCTGGTGACATGGATGAAAGGCAATACCACCGGTGCAGCGAGCATTCAGGCTGGACTGCCTGCTTCCTGGGTTGTGGGGGATAGAACCGGCAGCGGTGGCTATGGCACCACCAACGATATCGCGGTGATCTGGCCAAAAGATCGTGCGCCGCTGATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCAGAAAGCCGTCGCGATGTATTAGCGTCGGCGGCTAAAATCGTCACCAA", "fmax": "864", "accession": "JF274244.1", "fmin": "0", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Shigella sp. SH219", "NCBI_taxonomy_id": "1074433", "NCBI_taxonomy_cvterm_id": "39656"}, "protein_sequence": {"accession": "AEM44650.1", "sequence": "VKKSLRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDRTGSGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVT"}}}}}}}, "3024": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "575"}}}}}}, "1104": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "520": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "522": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}}}, "2262": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "1015": {"$update": {"ARO_category": {"$delete": ["35944", "40514", "40518", "36242", "35939", "35951", "40727", "35972", "41239", "35935", "35936", "36192", "36193", "36310", "36218", "37250", "36659", "35960", "36174", "35923", "36526", "36296"]}}}, "1401": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "2264": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "2769": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36218", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "2768": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "1232": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "2763": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935", "36526"]}}}, "2762": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935"]}}}, "1337": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "36526"]}}}, "2760": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "40727", "36310", "35960", "35923", "35935", "36526"]}}}, "2766": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2765": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "2117": {"$update": {"model_sequences": {"$update": {"sequence": {"5850": {"dna_sequence": {"partial": "0", "sequence": "ATGCGCTCACGCAACTGGTCCAGAACCTTGACCGAACGCAGCGGTGGTAACGGCGCAGTGGCGGTTTTCATGGCTTGTTATGACTGTTTTTTTGTACAGTCTATGCCTCGGGCATCCAAGCAGCAAGCGCGTTACGCCGTGGGTCGATGTTTGATGTTATGGAGCAGCAACGATGTTACGCAGCAGGGCAGTCGCCCTAAAACAAAGTTAGGCATCACAAAGTACAGCATCGTGACCAACAGCAACGATTCCGTCACACTGCGCCTCATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGCTAAATCGATCTCATATCGTCGAGTGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGAACAGTACTTGCCAAGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCGATTGGGTATGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGATGGTGGGAAGAAGAAACCGATCCAGGAGTACGCGGAATAGACCAGTTACTGGCGAATGCATCACAACTGGGCAAAGGCTTGGGAACCAAGCTGGTTCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACCAAGATCCAAACGGACCCGTCGCCGAGCAACTTGCGAGCGATCCGATGCTACGAGAAAGCGGGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATGGTCCAGCCGTGTACATGGTTCAAACACGCCAGGCATTCGAGCGAACACGCAGTGATGCCTAA", "fmax": "75350", "accession": "KR091911.1", "fmin": "74564", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Salmonella enterica subsp. enterica serovar Corvallis", "NCBI_taxonomy_id": "593905", "NCBI_taxonomy_cvterm_id": "35906"}, "protein_sequence": {"accession": "AKN19287.1", "sequence": "MRSRNWSRTLTERSGGNGAVAVFMACYDCFFVQSMPRASKQQARYAVGRCLMLWSSNDVTQQGSRPKTKLGITKYSIVTNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQTRQAFERTRSDA"}}}}}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "475"}}}}}}, "2046": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "900": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "907": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", 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{"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35923", "35920", "35935", "36526"]}}}, "3298": {"$update": {"ARO_category": {"$delete": ["36174", "36193", "35972", "36296", "36659", "41239", "40727", "36310", "35944", "35960", "40514", "36189", "36218", "40518", "36526", "35936"]}}}, "3299": {"$update": {"ARO_category": {"$delete": ["36174", "36193", "35972", "36296", "36659", "41239", "40727", "36310", "35944", "35960", "40514", "36189", "36218", "40518", "36526", "35936"]}}}, "1903": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "558": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "856": {"$update": {"ARO_category": {"$delete": ["36189", 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clavulanate)."}}}}}, "2682": {"$update": {"ARO_category": {"$delete": ["36193", "37250", "40727", "35935", "35960"], "$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "2683": {"$update": {"ARO_category": {"$delete": ["36193", "37250", "40727", "35935", "35960"], "$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "91": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "1991": {"$update": {"ARO_category": {"$delete": ["36017", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "1624": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "2860": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2861": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2862": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2863": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2865": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "700"}}}}}}, "2866": {"$update": {"model_param": {"$update": 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"ATGCGTTATGTTCGCCTGTGTGTTATCTCCCTGTTAGCCACCCTGCCACTGGCGGTATACGCCGGTCCACAGCCGCTTGAGCAGATTAAACAAAGCGAAAGCCAGCTGTCGGGCCGCGTGGGGATGGTGGAAATGGATCTGGCCAGCGGCCGCACGCTGGCCGCCTGGCGCGCCGATGAACGCTTTCCCATGGTGAGCACCTTTAAAGTGCTGCTGTGCGGCGCGGTGCTGGCGCGGGTGGATGCCGGGCTCGAACAACTGGATCGGCGGATCCACTACCGCCAGCAGGATCTGGTGGACTACTCCCCGGTCAGCGAAAAACACCTTGTCGACGGGATGACGATCGGCGAACTCTGCGCCGCCGCCATCACCCTGAGCGATAACAGCGCTGGCAATCTGCTGCTGGCCACCGTCGGCGGCCCCGCGGGATTAACTGCCTTTCTGCGCCAGATCGGTGACAACGTCACCCGTCTTGACCGCTGGGAAACGGCACTGAATGAGGCGCTTCCCGGCGACGCGCGCGACACCACCACCCCGGCCAGCATGGCCGCCACGCTGCGCAAACTACTGACCGCGCAGCATCTGAGCGCCCGTTCGCAACAGCAACTCCTGCAGTGGATGGTGGACGATCGGGTTGCCGGCCCGCTGATCCGCGCCGTGCTGCCGGCGGGCTGGTTTATCGCCGACAAAACCGGGGCTGGCGAACGGGGTGCGCGCGGCATTGTCGCCCTGCTCGGCCCGGACGGCAAACCGGAGCGCATTGTGGTGATCTATCTGCGGGATACCCCGGCGAGTATGGCCGAGCGTAATCAACATATCGCCGGGATCGGCGCAGCGCTGATCGAGCACTGGCAACGCTAA", "fmax": "31069", "accession": "QIXO01000012.1", "fmin": "30208", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella variicola", "NCBI_taxonomy_id": "244366", "NCBI_taxonomy_cvterm_id": "42612"}, "protein_sequence": {"accession": "PXK69226.1", "sequence": "MRYVRLCVISLLATLPLAVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGARGIVALLGPDGKPERIVVIYLRDTPASMAERNQHIAGIGAALIEHWQR"}}}}}}}, "3349": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "1191": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "40518", "41239"]}}}, "2223": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "40727", "36310", "35960", "35923"]}}}, "1757": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "1752": {"$update": {"ARO_category": {"$delete": ["36189", "36193", "35960"]}}}, "618": {"$update": {"ARO_category": {"$delete": ["36189", "35920", "35960"]}}}, "714": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "175"}}}}}}, "142": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "1198": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "1270": {"$update": {"model_sequences": {"$update": {"sequence": {"5854": {"dna_sequence": {"partial": "1", "sequence": "TGGAAACCTACAATCATACATATCGGCACCGCAACTTTTCACATAAAGACTTAAGTGATCTCACCTTCACCGCTTGCACATTCATTCGCAGCGACTTTCGACGTGCTAACTTGCGTGATACGACATTCGTCAACTGCAAGTTCATTGAACAGGGTGATATCGAAGGCTGCCACTTTGATGTCGCAGATCTTCGTGATGCAAGTTTCCAACAATGCCAACTTGCGATGGCAAACTTCAGTAATGCCAATTGCTACGGTATAGAGTTCCGTGCGTGTGATTTAAAAGGTGCCAACTTTTCCCGAACAAACTTTGCCCATCAAGTGAGTAATCGTATGTACTTTTGCTCAGCATTTATTTCTGGATGTAATCTTTCCTATGCCAATATGGAGAGGGTTTGTTTAGAAAAATGTGAGTTGTTTGAAAATCGCTGGATAGGAACGAACCTAGCGGGTGCATCACTGAAAGAGTCAGACTTAAGTCGAGGTGTTTTTTCCGAAGATGTCTGGGGGCAATTTAGCCTACAGGGTGCCAATTTATGCCACGCCGAACTCGACGGTTTAGATCCCCGCAAAGTCGATACATCAGGTATCAAAATTGCAGCCTGGCAGCAAGAACTGATTCTCGAAGCACTGGGTATTGTTGTTTATCCTGACTAA", "fmax": "656", "accession": "EU077611", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli", "NCBI_taxonomy_id": "562", "NCBI_taxonomy_cvterm_id": "35914"}, "protein_sequence": {"accession": "ABU52984.1", "sequence": 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"ATGAAAAAATTTATACTTCCTATATTCAGCATTTCTATTCTAGTTTCTCTCAGTGCATGTTCATCTATTAAAACTAAATCTGAAGATAATTTTCATATTTCTTCTCAGCAACATGAAAAAGCTATTAAAAGCTATTTTGATGAAGCTCAAACACAGGGTGTAATTATTATTAAAGAGGGTAAAAATCTTAGCACCTATGGTAATGCTCTTGCACGAGCAAATAAAGAATATGTCCCTGCATCAACATTTAAGATGCTAAATGCTTTAATCGGGCTAGAAAATCATAAAGCAACAACAAATGAGATTTTCAAATGGGATGGTAAAAAAAGAACTTATCCTATGTGGGAGAAAGATATGACTTTAGGTGAGGCAATGGCATTGTCAGCAGTTCCAGTATATCAAGAGCTTGCAAGACGGACTGGCCTAGAGCTAATGCAGAAAGAAGTAAAGCGGGTTAATTTTGGAAATACAAATATTGGAACACAGGTCGATAATTTTTGGTTAGTTGGCCCCCTTAAAATTACACCAGTACAAGAAGTTAATTTTGCCGATGACCTTGCACATAACCGATTACCTTTTAAATTAGAAACTCAAGAAGAAGTTAAAAAAATGCTTCTAATTAAAGAAGTAAATGGTAGTAAGATTTATGCAAAAAGTGGATGGGGAATGGATGTTACTCCACAGGTAGGTTGGTTGACTGGTTGGGTGGAGCAAGCTAATGGAAAAAAAATCCCCTTTTCGCTCAACTTAGAAATGAAAGAAGGAATGTCTGGTTCTATTCGTAATGAAATTACTTATAAGTCGCTAGAAAATCTTGGAATCATTTAA", "fmax": "2033", "accession": "GU199039.2", "fmin": "1205", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Acinetobacter baumannii", "NCBI_taxonomy_id": "470", "NCBI_taxonomy_cvterm_id": "35507"}, "protein_sequence": {"accession": "ADB28892.1", "sequence": "MKKFILPIFSISILVSLSACSSIKTKSEDNFHISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLPFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMDVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYKSLENLGII"}}}}}}}, "1880": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "36193", "40727", "35960", "35923", "35935"]}}}, "2083": {"$update": {"model_sequences": {"$update": {"sequence": {"5886": {"dna_sequence": {"partial": "0", "sequence": "ATGAAAAAAGATAGAAAAGAAGAAATACAAGAAGTTACTGAAAACATTATTGAAAAAAATATGGCCGATATAATGTCTGATAGATTCGGACGTTATTCAAAATACATTATTCAACAAAGAGCAATTCCTGATGCTCGTGATGGACTAAAACCTGTTCAACGTCGGATTTTATATTCAATGTGAAATTTACATTTAAAAAATAGCGAGCCTTTTAAAAAATCAGCTAGAATCGTTGGGGATGTTATCGGACGTTATCACCCTCATGGAGATAGTTCAATATACGAGGCATTAGTCAGAATGGCTCAAGATTGAAAAAGCAATTTCCCATTAATTGAAATGCATGGTAATAAAGGTTCAATTGATGATGACCCTGCCGCTGCAATGCGTTACACTGAATCAAGACTTGAAAAAATTAGTGAACTGATGTTGAGAGATTTAGACAGAAAAGTTGTAAAAATGGCTCCAAACTTTGATGACTCTGAATACGAACCAATTGTTTTGCCGGCCTTATTTCCTAATTTATTAGTTAACGGTGCTAAAGGAATTGCTGCTGGTTTTGCTACAGAAATCCCACCACATAATCTAGGCGAAGTTATTGATGCAACAATTGCATTAATCAAAAATCCTACAATATCAATTGAAGAATTAAGTGAAATAGTTAAAGGCCCAGATTTCCCAACAGGAGCAATTATTAATGGTATAAATGAAATAAAAAAAGCTCTTTCAAGTGGGCAAGGTAGAATTACAATTTCTTCGAAATATCATTACGTTTATGATAAAAAAGATGAATCGAAAATTATTGGTATTGAAATAATTGAAATTCCTTTTGGGGTTGTTAAATCAAAATTAGTTGCCGACATTGATGCAATTGCAATAGATAAAAAAATTTCTGGTATTAAAGAAGTTTTGGACCAAACAGATAGAAATGGAATTTCAATATTTATTCAATTAGAAGATGGTGCAAATGCTGACGCAATAATTGCATACTTAATGAATAAAACCGAACTAAGCATCTCGTATAGTTATAACATGGTTGCAATTGACAATAACCGTCCAGTAATTTTGAATCTCTATAGTGCCTTAATTGCTTATTTAAGTCATTTAAAAGAAGTTAATATAAATGGTATTAATTATGATTTAAAGAAGTTTAAATTGAGACTAGAAATAGTTGAAGGGTTCATTAAAGTAGCCGAAATTTCTGATGAAGTTATACATTTGATTAAAGAAAGCGATAACTCAAAAAAAGGTGTTATCCTTGCATTGATGAATAAATTTAAATTTAGTGAATTGCAAGCAACAGCGATTGCTGAATTAAGATTGTATAAGCTTTCAAGAATGGATCAAATCGAATTTCAAGAAGAAAAGAAAAACCTTGAAATTCAAATTGAAAATTGCAATAAATTATTAAATGATAAATGAGAATTTAATCAATATTTAATAAAGCAATTGCTTGAAATAAAAAATCAATATTCAAAGCCAAGATTAACGGAAATTTCAGATCAAAAAATCGATAAAGAAATTGATCATAAATTATTGACAAAAAATGAAGATTTTTATTTATATATAACCAAAGATGGATATTATAAAAAAATAAGTTTAAAAGTTTATACTAGCAATGAATTAAACACATTCAAATTAAAAGAAGAAGATAATGTTTTCTATTTTGATAAAGTAAACTCATTATCAAAGATATTATTCTTTACAAATTTAGGGAATTATTTTATTATTGATTGCCATTTGTTTAAAGATTGCAATTGAAAAGATCTTGGTCAACATATTTCATCAATAGTAGCTCTAGAAAGCTCAGAAAAAATTATTAGAGTTATAGAAATTACGTCATTCAATAGTTATGCAAACTTTATTTTAATGTCAAAATTAGGATATGCCAAAAAAGTTAATTTAAGAGATTTTGAAAATAAATCTTCTCTTAAAACAAAAACTTGCATGTCGTTTAAGGATGATAATGATGAATTAATAGATGCCCAAATTTCTAATGATGAAAAAATGCTATTTATTTTACTAAATAATGGTATGTATCATTTAGTTTCAGAAAACGAACTAAAGGTTGGAATTTCTTTGAAAGCAAGAGGCATTAGACTTCTTTTAAACTTATATAAACATCCTCAACTTCAAGTAAGTGGTTTTATAACAGTTTCAAAATACAACAATATAATTTATTTAACGCAAGGTGGTTATATAAAATGTTGGGATACTAGCAAATTAGAATTGACCACACGCAATACTCCAAAAATGTTGTTTACGCCACTAAAAAATAATATTTTAGGTCTTCAATCACTTGCTGTTACATTGAGCAATTTAAAAATGTTATACACTGATAATAATGGTAATTTGGCAGAATATGATTGAAAATTTATATTAAAAGATAAGACTAAGGAAAGTAAACTTCTTAAATTAGATTATTCATTTACTAACCCTGGGTATTTTATTACGCCAATAAAAATTAATGAATTAATTGAAGCTGATGAAATAGAGCAGGAAAAAATAAGACAAGAATATCAAGGATATATTGATAAAAATATTGAATTGACCGCTGAACATGCTTTGATTAAAAAATCCTATGATCAAGATATTCAACATTTAAATAATGAAGAACAAGAAGAACTATTTCAAATATCTACAGAAGATATTGAATTACCAAATGTTTCAAATAATGTTAATGACAACCAAAAAGATAAAAAAAATATAGCAACAAAAGAAAGCGTTAGTCAGAAAATACAAGAAATTGAAAAAATAGATCTTGAAACAATAATGCAAAAAATTAAACAAATTAAGAAAAAATAG", "fmax": "663064", "accession": "CP011538.1", "fmin": "660262", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Mycoplasma hominis", "NCBI_taxonomy_id": "2098", "NCBI_taxonomy_cvterm_id": "40311"}, "protein_sequence": {"accession": "AKJ52802.1", "sequence": "MKKDRKEEIQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLRDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFATEIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINEIKKALSSGQGRITISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDRNGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNNRPVILNLYSALIAYLSHLKEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKKGVILALMNKFKFSELQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQYLIKQLLEIKNQYSKPRLTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKISLKVYTSNELNTFKLKEEDNVFYFDKVNSLSKILFFTNLGNYFIIDCHLFKDCNWKDLGQHISSIVALESSEKIIRVIEITSFNSYANFILMSKLGYAKKVNLRDFENKSSLKTKTCMSFKDDNDELIDAQISNDEKMLFILLNNGMYHLVSENELKVGISLKARGIRLLLNLYKHPQLQVSGFITVSKYNNIIYLTQGGYIKCWDTSKLELTTRNTPKMLFTPLKNNILGLQSLAVTLSNLKMLYTDNNGNLAEYDWKFILKDKTKESKLLKLDYSFTNPGYFITPIKINELIEADEIEQEKIRQEYQGYIDKNIELTAEHALIKKSYDQDIQHLNNEEQEELFQISTEDIELPNVSNNVNDNQKDKKNIATKESVSQKIQEIEKIDLETIMQKIKQIKKK"}}}}}}}, "944": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36193", "35951", "41239", "35920", "36296"]}}}, "2081": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36192", "36193", "35951", "41239", "36296"]}}}, "1471": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "36193", "40727", "35960", "35923", "35935"]}}}, "1476": {"$update": {"model_sequences": {"$update": {"sequence": {"5867": {"dna_sequence": {"partial": "1", "sequence": "TCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATAAGTTGGGTGCACGAGTGGGTTACATCGAGCTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGTGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTAAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATTGGGGATCATGTAACCCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGCAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCAGTGAGCGTGGATCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAA", "fmax": "853", "accession": "JX050178", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Proteus mirabilis", "NCBI_taxonomy_id": "584", "NCBI_taxonomy_cvterm_id": "36771"}, "protein_sequence": {"accession": "AFN69127.1", "sequence": "QHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNIGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW"}}}}}}}, "1474": {"$update": {"ARO_category": {"$delete": ["36193", "37250", "40727", "35935", "35960"], "$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "1570": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "36193", "40727", "36310", "35960", "35923", "36526"]}}}, "1576": {"$update": {"model_sequences": {"$update": {"sequence": {"5864": {"dna_sequence": {"partial": "1", "sequence": "ATGAAAACATTTGCCGCATATGTAATTATCGCGTGTCTTTCGAGTACGGCATTAGCTGGTTCAATTACAGAAAATACGTCTTGGAACAAAGAGTTCTCTGCCGAAGCCGTCAATGGTGTCTTCGTGCTTTGTAAAAGTAGCAGTAAATCCTGCGCTACCAATGACTTAGCTCGTGCATCAAAGGAATATCTTCCAGCATCAACATTTAAGATCCCCAGCGCAATTATCGGCCTAGAAACTGGTGTCATAAAGAATGAGCATCAGGTTTTCAAATGGGACGGAAAGCCAAGAGCCATGAAGCAATGGGAAAGAGACTTGACCTTAAGAGGGGCAATACAAGTTTCAGCTGTTCCCGTATTTCAACAAATCGCCAGAGAAGTTGGCGAAGTAAGAATGCAGAAATACCTTAAAAAATTTTCCTATGGCAACCAGAATATCAGTGGTGGCATTGACAAATTCTGGTTGGAAGGCCAGCTTAGAATTTCCGCAGTTAATCAAGTGGAGTTTCTAGAGTCTCTATATTTAAATAAATTGTCAGCATCTAAAGAAAACCAGCTAATAGTAAAAGAGGCTTTGGTAACGGAGGCGGCACCTGAATATCTAGTGCATTCAAAAACTGGTTTTTCTGGTGTGGGAACTGAGTCAAATCCTGGTGTCGCATGGTGGGTTGGGTGGGTTGAGAAGGAGACAGAGGTTTACTTTTTCGCCTTTAACATGGATATAGACAACGAAAGTAAGTTGCCGCTAAGAAAATCCATTCCCACCAAAATCATGGAAAGTGAGGGCATCATTGGTGGCTAA", "fmax": "3517", "accession": "DQ902344.1", "fmin": "2716", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella pneumoniae", "NCBI_taxonomy_id": "573", "NCBI_taxonomy_cvterm_id": "35915"}, "protein_sequence": {"accession": "ABI63579.1", "sequence": "MKTFAAYVIIACLSSTALAGSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFKIPSAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGIIGG"}}}}}}}, "2712": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "36193", "40727", "36310", "35960", "35923", "36526"]}}}, "2713": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "40727", "36310", "35960", "35923"]}}}, "2659": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "2711": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "40727", "36310", "35960", "35923"]}}}, "2716": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35939", "36193", "40727", "36310", "35960", "35920", "35935", "36526"]}}}, "2717": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35939", "36193", "40727", "36310", "35960", "35920", "35935", "36526"]}}}, "2718": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35939", "36193", "40727", "36310", "35960", "35920", "35935", "36526"]}}}, "2656": {"$update": {"ARO_category": {"$delete": ["36189", "35935", "36242", "36526"]}}}, "2655": {"$update": {"ARO_category": {"$delete": ["36189", "36242", "36526", "35919"]}}}, "2654": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "35923", "35935", "36526"]}}}, "138": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}}}, "1835": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "402": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2400": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "35923", "35935", "36526"]}}}, "2745": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "1344": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "40727", "36310", "35960", "35923", "35935", "36526"]}}}, "1952": {"$update": {"ARO_category": {"$insert": {"40951": {"category_aro_name": "piperacillin-tazobactam", "category_aro_cvterm_id": "40951", "category_aro_accession": "3004021", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the penam beta-lactam antibiotic Piperacillin and the beta-lactamase inhibitor Tazobactam."}}}}}, "442": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "40727", "36310", "35960", "35923", "35935", "36526"]}}}, "825": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "500"}}}}}}, "372": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "375": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "820": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935", "36526"]}}}, "377": {"$update": {"ARO_category": {"$delete": ["36189", "36193", "35920", "35960"]}}}, "704": {"$update": {"ARO_category": {"$delete": ["37250", "35939", "36193", "40727", "35960", "35923"]}}}, "1488": {"$update": {"model_sequences": {"$update": {"sequence": {"5896": {"dna_sequence": {"partial": "1", "sequence": "TTTTTTGCGGCATTTTGCTTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAGCTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGTGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACCCGCCTTGATCATTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGCAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGATCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACATGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACA", "fmax": "785", "accession": "AY130284", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella pneumoniae", "NCBI_taxonomy_id": "573", "NCBI_taxonomy_cvterm_id": "35915"}, "protein_sequence": {"accession": "AAN05028.1", "sequence": "FFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYMTGSQATMDERNR"}}}}}}}, "2303": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "2306": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "1138": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "245": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "750"}}}}}}, "2835": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36192", "36193", "35951", "41239", "36296"]}}}, "1437": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "1435": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "800"}}}}}}, "1430": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "525"}}}}}}, "1438": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "500"}}}}}}, "2378": {"$update": {"model_sequences": {"$update": {"sequence": {"5882": {"dna_sequence": {"partial": "0", "sequence": "TTGTACCTCTATATTGAGACTCTGAAACAGAGACTGGATGCCATAAATCAATTGCGTGTGGATCGCGCGCTTGCTGCTATGGGGCCTGCATTCCAACAGGTCTACAGTCTACTGCCGACATTGTTGCACTATCACCATCCGCTAATGCCGGGTTACCTTGATGGTAACGTTCCCAAAGGCATTTGCCTTTACACGCCTGATGAAACTCAACGCCACTACCTGAACGAGCTTGAACTGTATCGTGGAATGTCAGTACAGGATCCGCCGAAAGGTGAGCTTCCAATTACTGGTGTATACACCATGGGCAGCACCTCGTCCGTAGGGCAAAGTTGTTCCTCTGACCTGGATATCTGGGTCTGTCATCAATCCTGGCTCGATAGCGAAGAGCGCCAATTGCTACAACGTAAATGTAGCCTGCTGGAAAACTGGGCCGCCTCGCTGGGTGTGGAAGTCAGCTTCTTCCTGATTGATGAAAACCGCTTCCGTCATAATGAAAGCGGCAGCCTGGGGGGCGAAGATTGTGGCTCCACCCAGCATATACTGCTGCTTGACGAATTTTATCGTACCGCCGTGCGTCTCGCCGGTAAGCGTATTCTGTGGAATATGGTGCCGTGCGACGAAGAAGAGCATTACGACGACTATGTGATGACGCTTTACGCGCAGGGCGTGCTGACGCCAAATGAATGGCTGGATCTCGGTGGCTTAAGCTCGCTTTCTGCTGAAGAGTACTTTGGTGCCAGCCTTTGGCAGCTCTACAAGAGTATCGATTCCCCATACAAAGCGGTACTGAAAACACTGCTGCTGGAAGCCTATTCCTGGGAATACCCGAACCCACGTCTGCTGGCGAAAGATATCAAACAGCGTTTGCACGACGGCGAGATTGTATCGTTTGGTCTCGATCCATACTGCATGATGCTGGAGCGTGTTACTGAATACCTGACGGCGATTGAAGATTTTACCCGTCTGGATTTAGTACGTCGCTGCTTCTATTTAAAAGTGTGCGAAAAGCTCAGCCGTGAACGCGCCTGCGTAGGCTGGCGTCGCGCAGTGTTGAGCCAGTTAGTGAGCGAGTGGGGTTGGGACGAAGCTCGTCTGGCAATGCTCGATAACCGCGCTAACTGGAAGATTGATCAGGTGCGTGAGGCGCACAACGAGTTGCTCGACGCGATGATGCAGAGCTACCGTAATCTGATCCGCTTTGCGCGTCGCAATAACCTTAGCGTCTCCGCCAGTCCGCAGGATATCGGCGTGCTGACGCGTAAGCTGTATGCCGCGTTTGAAGCATTACCAGGTAAAGTGACGCTGGTAAACCCGCAGATTTCACCCGATCTCTCGGAACCGAATCTGACCTTTATTTATGTGCCGCCGGGCCGGGCTAACCGTTCAGGTTGGTATCTGTATAACCGCGCGCCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAGCGGCGTTCCGCAATCAGGTGGTGCATTTCGATTTCCGTAAGCTGGATGTCTTCAGCTTTGGCGAGAATCAAAATTGCCTGGTAGGTAGCGTTGACCTGCTGTACCGCAACTCGTGGAACGAAGTGCGTACGCTGCACTTCAACGGCGAGCAATCGATGATCGAAGCCCTGAAAACTATTCTCGGCAAAATGCATCAGGACGCCGCACCGCCAGATAGCGTGGAAGTCTTCTGTTATAGCCAGCATCTGCGCGGCTTAATTCGTACTCGCGTGCAGCAACTGGTTTCTGAGTGTATTGAATTGCGTCTTTCCAGCACCCGCCAGGAAACCGGGCGTTTCAAGGCGCTGCGCGTTTCTGGTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAATTACCGGCGGTGGTGGACGGCTTTGCCAGCGAAGGGATCATCCAGTTCTTTTTCGAAGAAACGCAAGACGAGAATGGCTTTAATATCTACATTCTCGACGAAAGCAACCGGGTTGAGGTATATCACCACTGCGAAGGCAGCAAAGAGGAGCTGGTACGTGACGTCAGTCGCTTCTACTCGTCATCGCATGACCGCTTTACCTACGGCTCAAGCTTCATCAACTTCAACCTGCCGCAGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGA", "fmax": "2788945", "accession": "HG738867", "fmin": "2786398", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli str. K-12 substr. 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{"accession": "WP_064190969.1", "sequence": "MSVSILPVKEQDAADWLALRNLLWLADDHASEIEQYFSGGFEEPAEVLIARDATGAAVGHVELSIRHDLEELQGIKTGYIEGLYVAPSHRSTDLVRRFLRESEKWALEQGCSAFASDRSDRVITHRKFAGSAV"}}}}}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "250"}}}}}}, "3286": {"$update": {"ARO_category": {"$delete": ["36017", "36174", "36193", "40514", "36659", "41239", "40727", "36310", "35960", "35972", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "3283": {"$update": {"ARO_category": {"$delete": ["36017", "36174", "36193", "40514", "36659", "41239", "40727", "36310", "35960", "35972", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "3281": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "36193", "40727", "36310", "35923", "35920", "36526"]}}}, "3280": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "35972", "36296", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", 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"TGTTATCTCCCTGTTAGCCACCCTGCCACTGGCGGTAGACGCCGGTCCACAGCCGCTTGAGCAGATTAAACAAAGCGAAAGCCAGCTGTCGGGCCGCGTGGGGATGGTGGAAATGGATCTGGCCAGCGGCCGCACGCTGGCCGCCTGGCGCGCCGATGAACGCTTTCCCATGGTGAGCACCTTTAAAGTGCTGCTGTGCGGCGCGGTGCTGGCGCGGGTGGATGCCGGGCTCGAACAACTGGATCGGCGGATCCACTACCGCCAGCAGGATCTGGTGGACTACTCCCCGGTCAGCGAAAAACACCTTACCGACGGGATGACGATCGGCGAACTCTGCGCCGCCGCCATCACCCTGAGCGATAACAGCGCTGGCAATCTGCTGCTGGCCACCGTCGGCGGCCCCGCGGGATTAACTGCCTTTCTGCGCCAGATCGGTGACAACGTCACCCGTCTTGACCGCTGGGAAACGGCACTGAATGAGGCGCTTCCCGGCGACGCGCGCGACACCACCACCCCGGCCAGCATGGCCGCCACGCTGCGCAAACTACTGACCGCGCAGCATCTGAGCGCCCGTTCGCAACAGCAACTCCTGCAGTGGATGGTGGACGATCGGGTTGCCGGCCCGCTGATCCGCGCCGTGCTGCCGCCGGGCTGGTTTATCGCCGACAAAACCGGGGCTGGCGAACGGGGTGCGCGCGGCATTGTCGCCCTGCTCGGCCCGGACGGCAAACCGGAGCGCATTGTGGTGATCTATCTGCGGGATACCCCGGCGAGTATGGCCGAGCGTAATCAACAAATCGCCGGGATCGGCGCGGCGCTGATC", "fmax": "823", "accession": "AY130287", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella pneumoniae", "NCBI_taxonomy_id": "573", 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{"dna_sequence": {"partial": "0", "sequence": "ATGAAGCGCAACATTCTTGCAGTGGTTATCCCGGCTCTGTTGGCTGCTGGTGCAGCAAACGCAGCTGAAATCTACAACAAAGACGGCAACAAGCTGGATCTGTACGGCAAAGTTGACGGTCTGCACTACTTCTCCGACGACAAAGGTAATGACGGCGATCAGACCTATGTTCGTTTCGGCTTCAAAGGTGAAACTCAGATTACTGACCAACTGACCGGTTACGGCCAGTGGGAATACAACGTCCAGGCTAACCACTCCGAATCTCAGGGCACCGAAGGCACCAAAACCCGTCTGGGCTTCGCGGGTCTGAAATTCGCTGACTACGGCTCCTTCGACTACGGCCGTAACTACGGCGTACTGTACGACGTGGAAGGCTGGACCGATATGCTGCCAGAGTTCGGTGGCGATACTTACACCTACACCGACAACTTCATGACCGGCCGTACCAACGGCGTTGCGACCTATCGTAACAACAACTTCTTCGGTCTGGTTGACGGTCTGAACTTCGCCGTTCAGTACCAGGGCAAAAACCAGAACGACGGCCGTAACGTCAAGAAACAAAACGGCGACGGCTGGGGCATCTCCTCTACTTATGACATCGGCGAAGGCGTAAGCTTCGGCGCTGCATACGCATCTTCTAACCGTACCGACGACCAAAAACTGCGTTCCAACGAGCGTGGCGACAAGGCTGACGCATGGACCGTGGGCGCGAAATACGACGCCAACAACGTTTACCTGGCGGCGATGTACGCAGAAACCCGTAACATGACTCCGTTCGGCGGCGGTAACTTCGGTGCTGGCTGTGCAGCTACCGATGACAAGTGCGGCGGCTTCGCGAGCAAAACTCAGAACTTCGAAGTGACTGCTCAGTACCAGTTCGACTTCGGTCTGCGTCCAGAAGTGTCTTACCTGCAGTCTAAAGGTAAAAACCTGAACGTCCCAGGCGTGGGTTCTGACCAGGATCTGGTTAAATATGTTTCTGTTGGTACCACCTATTACTTCAACAAGAACATGTCCACCTACGTTGATTACAAAATCAACCTGCTGGATGACAACGAGTTCACCAAAGCAACCGGCACCGCTACCGACGATATCGTAGCTGTTGGTCTGGTATACCAGTTCTAA", "fmax": "4320059", "accession": "CP005927.1", "fmin": "4318934", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Serratia sp. 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"36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "507": {"$update": {"ARO_category": {"$delete": ["36017", "36174", "36218", "36193", "35972", "36296", "35919", "36659", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "1037": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "800"}}}}}}, "630": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "36193", "40727", "35960", "35923", "35935"]}}}, "2429": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "1210": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "2430": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "35972", "36296", "35919", "36192", "36193", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "40518", "36526", "35936"]}}}, "634": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "36193", "40727", "36310", "35960", "35923", "35935"]}}}, "465": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "650"}}}}}}, "2421": {"$update": {"model_sequences": {"$update": {"sequence": {"5893": {"dna_sequence": {"partial": "0", "sequence": "TTGAAGTTAATGTGGCGTTACACAATGCGTTATAAGAAATTACTTTTCGCTGATTTTATTTGTGTGTTTGGTTTTATTTTGATTGAATTAGGCTTGCCGACCATTTTAGCACGAATGATTGACAAAGGAATTATTCCTAAAGATATGGACTATGTTTATCAGCAAGGGATTTGGATGGTTGTAATTACGATTATTGGTGTCGCAATGAATATTTTGCTAGGGTACTTTGGTGCCAGAATTACAACAAACATTGTTCGTGATATTCGTGATGATTTATTTGAAAAGATTCAAACTTTCTCACACAGTGAATATGAAAGTATTGGGGTTTCTTCCTTAATTACGCGAACTACCAATGATGCATACCAAATTATGCTCTTCATGGGAAATATTTTACGTCTTGGCTTTATGACGCCAGTGATGTTTATTGCCAGTCTTTACATGGTGATGCGGACGAGTCCGTCGTTAGGAATGTACGTTTTAGGTGCCTTGCCTTTTCTACTGCTAGCAGTTGTCGGAATTGCTCGTTTGTCAGAACCGTTATCTAAAAAGCAACAAAAGAACTTAGATGGAATCAATGGGATTTTAAGAGAAAATCTTTCTGGATTGCGGGTAATACGCGCATTTGTTAATGAAAAATTTGAAGAATCTCGTTTTAATAAAGTCAATGAAACTTACACTAAAAGTTCAAAAAGCCTGTTTCGTTTAATGGCAGCAGCCCAACCAGGGTTCTTTTTCTTATTTAATATTGTAATGGTCTTAATCATTTGGAGCGGGACTGTTCAAATCAGCCATGGGGATTTAGAAGTTGGGAATTTAATAGCTTTTATTGAATATATTTTCCATGCGCTGTTCTCGTTTATGTTATTTGCCAGTGTCTTTATGATGTATCCGCGGGCTGCGGTTTCGGCTTCGCGGATTCAAGAAGCCTTAGACATGGAACCAGCTATTCGTGAAGAAGAAGGCGTAACAGAAACAGCTACTAAAGGCTATCTAGAGTTTAAAAATGTAACCTTTGCCTATCCTGGACATGCGGAAAGCCCAGTCATCCGCAATGTAAGTTTTAAGGCGTCACCTGGTGAAACAGTGGCCTTTATTGGGAGCACAGGTAGTGGGAAATCAACATTAATTCAATTGATTCCACGGTTTTATGATGTATCAGAAGGTGAAATTTTAATCGATGGAGTGAACGTAAAAGAGTACAAACTTAGTGCATTACGCAATAAGATTGGCTATATTCCACAAAAAGCGTTACTTTTTACTGGTACAATTGCTGATAACCTTCGCTACGGTAAGGAAGATGCGACGTTAGAAGAAATGGAACGAGCAATTGACATTGCTCAAGCTACAGAATTTGTTTCACAAAAACCGCAAGGCTATGATGAACCTCTTTCAGAAGGTGGCACGAACTTTTCTGGTGGTCAAAAACAACGTTTAGCTATCGCACGGGCGATTATTCGCAATCCGGAAATTTATATATTTGATGATAGTTTTTCTGCGTTAGATTATCAAACAGATGCAAATTTACGAGCGCGTCTGAAAAAAGAAACAACAGAATCCACTGTTTTAATTGTGGCACAACGTGTTGGAACAATTATGCATGCGGACCGCATTGTTGTTTTAAACGAAGGCGACGTGGTCGGAATTGGCACACATCGTGAATTACTTGAGACTTGTCCAATTTACTATGATATTGCGGCTTCTCAATTGTCAGAGGAGGAATTAGCATGA", "fmax": "37586", "accession": "NZ_PTWF01000025.1", "fmin": "35858", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Enterococcus faecalis", "NCBI_taxonomy_id": "1351", "NCBI_taxonomy_cvterm_id": "35918"}, "protein_sequence": {"accession": "WP_104671188.1", "sequence": "MKLMWRYTMRYKKLLFADFICVFGFILIELGLPTILARMIDKGIIPKDMDYVYQQGIWMVVITIIGVAMNILLGYFGARITTNIVRDIRDDLFEKIQTFSHSEYESIGVSSLITRTTNDAYQIMLFMGNILRLGFMTPVMFIASLYMVMRTSPSLGMYVLGALPFLLLAVVGIARLSEPLSKKQQKNLDGINGILRENLSGLRVIRAFVNEKFEESRFNKVNETYTKSSKSLFRLMAAAQPGFFFLFNIVMVLIIWSGTVQISHGDLEVGNLIAFIEYIFHALFSFMLFASVFMMYPRAAVSASRIQEALDMEPAIREEEGVTETATKGYLEFKNVTFAYPGHAESPVIRNVSFKASPGETVAFIGSTGSGKSTLIQLIPRFYDVSEGEILIDGVNVKEYKLSALRNKIGYIPQKALLFTGTIADNLRYGKEDATLEEMERAIDIAQATEFVSQKPQGYDEPLSEGGTNFSGGQKQRLAIARAIIRNPEIYIFDDSFSALDYQTDANLRARLKKETTESTVLIVAQRVGTIMHADRIVVLNEGDVVGIGTHRELLETCPIYYDIAASQLSEEELA"}}}}}, "ARO_category": {"$delete": ["36017", "36189", "37014", "36192", "36193", "35951", "41239"]}}}, "2422": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "36192", "36193", "35951", "41239"]}}}, "2423": {"$update": {"ARO_category": {"$delete": ["36017", "37014", "35919", "36192", "36193", "35951", "36189", "35920", "36296"]}}}, "2424": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "35919", "36193", "35951", "41239", "35920", "36296"]}}}, "2425": {"$update": {"ARO_category": {"$delete": ["36189", "35960"]}}}, "2426": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "2427": {"$update": {"ARO_category": {"$delete": ["36017", "36174", "36218", "36193", "35972", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "1671": {"$update": {"ARO_category": {"$delete": ["36659", "36193", "37014", "35972", "36242", "35919", "36192", "36174", 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"ATGGGTAAAAACGAGGCCAGAAGATCGGCCCTGGCGCCCGATCACGGTACAGTGGTGTGCGACCCCCTGCGGCGACTCAACCGCATGCACGCAACCCCTGAGGAGAGTATTCGGATCGTGGCTGCCCAGAAAAAGAAGGCCCAAGACGAATACGGCGCTGCGTCTATCACCATTCTCGAAGGGCTGGAGGCCGTCCGCAAACGTCCCGGCATGTACATTGGCTCGACCGGTGAGCGCGGTTTACACCATCTCATTTGGGAGGTGGTCGACAACGCGGTCGACGAGGCGATGGCCGGTTATGCAACCACAGTGAACGTAGTGCTGCTTGAGGATGGCGGTGTCGAGGTCGCCGACGACGGCCGCGGCATTCCGGTCGCCACCCACGCCTCCGGCATACCGACCGTCGACGTGGTGATGACACAACTACATGCCGGCGGCAAGTTCGACTCGGACGCGTATGCGATATCTGGTGGTCTGCACGGCGTCGGCGTGTCGGTGGTTAACGCGCTATCCACCCGGCTCGAAGTCGAGATCAAGCGCGACGGGTACGAGTGGTCTCAGGTTTATGAGAAGTCGGAACCCCTGGGCCTCAAGCAAGGGGCGCCGACCAAGAAGACGGGGTCAACGGTGCGGTTCTGGGCCGACCCCGCTGTTTTCGAAACCACGGAATACGACTTCGAAACCGTCGCCCGCCGGCTGCAAGAGATGGCGTTCCTCAACAAGGGGCTGACCATCAACCTGACCGACGAGAGGGTGACCCAAGACGAGGTCGTCGACGAAGTGGTCAGCGACGTCGCCGAGGCGCCGAAGTCGGCAAGTGAACGCGCAGCCGAATCCACTGCACCGCACAAAGTTAAGAGCCGCACCTTTCACTATCCGGGTGGCCTGGTGGACTTCGTGAAACACATCAACCGCACCAAGAACGCGATTCATAGCAGCATCGTGGATTTTTCCGGCAAGGGCACCGGGCACGAGGTGGAGATCGCGATGCAATGGAACGCCGGGTATTCGGAGTCGGTGCACACCTTCGCCAACACCATCAACACCCACGAGGGCGGCACCCACGAAGAGGGCTTCCGCAGCGCGCTGACGTCGGTGGTGAACAAGTACGCCAAGGACCGCAAGCTACTGAAGGACAAGGACCCCAACCTCACCGGTGACGATATCCGGGAAGGCCTGGCCGCTGTGATCTCGGTGAAGGTCAGCGAACCGCAGTTCGAGGGCCAGACCAAGACCAAGTTGGGCAACACCGAGGTCAAATCGTTTGTGCAGAAGGTCTGTAACGAACAGCTGACCCACTGGTTTGAAGCCAACCCCACCGACGCGAAAGTCGTTGTGAACAAGGCTGTGTCCTCGGCGCAAGCCCGTATCGCGGCACGTAAGGCACGAGAGTTGGTGCGGCGTAAGAGCGCCACCGACATCGGTGGATTGCCCGGCAAGCTGGCCGATTGCCGTTCCACGGATCCGCGCAAGTCCGAACTGTATGTCGTAGAAGGTGACTCGGCCGGCGGTTCTGCAAAAAGCGGTCGCGATTCGATGTTCCAGGCGATACTTCCGCTGCGCGGCAAGATCATCAATGTGGAGAAAGCGCGCATCGACCGGGTGCTAAAGAACACCGAAGTTCAGGCGATCATCACGGCGCTGGGCACCGGGATCCACGACGAGTTCGATATCGGCAAGCTGCGCTACCACAAGATCGTGCTGATGGCCGACGCCGATGTTGACGGCCAACATATTTCCACGCTGTTGTTGACGTTGTTGTTCCGGTTCATGCGGCCGCTCATCGAGAACGGGCATGTGTTTTTGGCACAACCGCCGCTGTACAAACTCAAGTGGCAGCGCAGTGACCCGGAATTCGCATACTCCGACCGCGAGCGCGACGGTCTGCTGGAGGCGGGGCTGAAGGCCGGGAAGAAGATCAACAAGGAAGACGGCATTCAGCGGTACAAGGGTCTAGGTGAAATGGACGCTAAGGAGTTGTGGGAGACCACCATGGATCCCTCGGTTCGTGTGTTGCGTCAAGTGACGCTGGACGACGCCGCCGCCGCCGACGAGTTGTTCTCCATCCTGATGGGCGAGGACGTCGACGCGCGGCGCAGCTTTATCACCCGCAACGCCAAGGATGTTCGGTTCCTGGATGTCTAA", "fmax": "2445", "accession": "X78888.1", "fmin": "300", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Mycobacterium tuberculosis H37Ra", "NCBI_taxonomy_id": "419947", "NCBI_taxonomy_cvterm_id": "40415"}, "protein_sequence": {"accession": "CAA55486.1", "sequence": "MGKNEARRSALAPDHGTVVCDPLRRLNRMHATPEESIRIVAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLEDGGVEVADDGRGIPVATHASGIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQGAPTKKTGSTVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV"}}}}}}}, "2518": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2517": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2104": {"$update": {"model_sequences": {"$update": {"sequence": {"5888": {"dna_sequence": {"partial": "0", "sequence": "ATGAGTGTAAATCATCAAAAAATTATTAATACACCTTTAGACAACATTGTTGGTGAAAGTTATGCAAAATATGCAAAATACATTATTCAAGATCGTGCTTTACCTGATATTCGTGATGGTTTAAAACCTGTTCAACGACGAATTTTATACGCAATGAGTGAATTAGGAATCTTTTATGATAAACCTTATAAAAAATCTGCACGTACAGTAGGAGAAGTAATTGGTAAATATCATCCACATGGAGATTCATCAATTTATGAAGCAATGGTGAGAATGAGTCAAGATTGAAAAAATAATCTATGTTTATTAGATATGCATGGTAATAAAGGTTCAATTGATGGTGATAATGCTGCTGCAATGCGTTATACAGAAGCTCGATTATCAAAAATTGCTAGTGTAATGTTAGCCAACTTAAAAAAAGATGTTGTTAAATTTAGTCCAAACTTTGATGATAGTGAAAAAGAGCCATCAATTTTACCATCTCTTTTTCCTAATTTGTTAATCAATGGAGCAACAGGAATTGCTTCTGGTTATGCAACAAATATTCCTCCTCATAACCCTAATGAAGTTTTTGATGCTTTAATTTATCGTATTGATCATCCAGATTGTAGTGTAGAAAAACTAATTGAAATCTGTCCTGCGCCAGATTTTCCCACAGGTGGGGAAATCCACGATTTAAATGGATGTGCTAATGCTCACAAAACTGGTGAAGGTAAATTTATAATTCGTGCTTGCATTGATTTTAAAATCAATGATAATAAGATTAATCAAATTATTATTAGTTCAATCCCTTATGAAACAAACAAGGCTTTAATCATTAAAGAAATTGAAGATATTATTTATAATAAAGAAGTTGCTGGATTAATCGAAGTTCGTGATGAATCTGATGCTAAGGGAATTAGTATAATTATTGATACTAAAAAAGATATTAATTTAGAAAATGTTAAAAACTATTTATATAAAAAAACCAACTTGGAAATCAGCTATAATACAAAATTTATTGCAATTGTTCACCGAACTCCTACACTTGTAAATCTATCTACATATTTAGATGCTCAAATTAATCATAGTTTAGATGTAATTAATAAAGTCGATTTATATGATCTAAACAAAATTTTGTTACGTATTGAAATTGTTGAAGGCTTAATTAAATGCGTTGATTTAATTGATGAAATTATTAAAATTATTCGTGCTAGTGAATCGCGTCAAGATGCAAAAAATACTTTAATTCAAGTTTTTAATTTTACAAATAATCAAGCTGAAGCGATTATTATGATGCGTTTACATAATTTGACACGTACTGATATATTTGATTTAAAAAATGAATGACAAACGCTACAAGACGAAGCTAAAACGCTACAAGAACGAATAAATTCACTTCAAGTTCGCAAAAATTATTTAAAACAAAAAATGATTGAATTTAAAAAAACTTTTGGTTTTGAACGCAAAACAAAATTATTTGATGAATTAGTAAAAGTTGAAATAAACGAAGATCAAATGATCGAAAAACAAAATTTGAATTTAGTAATAAGTCGTGATGGATACATTAAAACTGTTTCTAAAAAGTCATTTGAGTCATCTAAATATGATGAATTAGGATTAAAAACTAATGATATTCTTTTTTATCATAATATCATTAATTCTCATGATAAAATCCTAATCATTACATCAAAAGCTAAATTAATTAATTTAGTTGCTCATAAAATCACTTCTATGCGGTGAAAAGATGTTGGTGAACACTTAAATAATTATGTGAAATTTGATGCTAATGAAAAAGTTATAGCTGTTTATATATGGAACGAACAATTTAAAATTGATGAATATCAATTAGTTTTGGCTTCTAGATTAAATCTAATTAAAAGAATTGAATTAAGCGAGTTGGATATAAATAAAAATAGTAAACAAATTAGCATTATGAAATTAAATGATAATGATAATTTAATCAGTGCTAATTTAATCAAAAAAGGTCATAATCAATTTATTATTGCAATTTCTAAATTAGGATTAGCCCTGCTATTTTTAGTTCATGAAATTAATTGCTTAAATCGTTTAGCTAAAGGAATTAAAATTATGAAATTAAAACCAAATGATGAGGTTAGTGCTATTTTAATTACTCCTAATAATGGTTATAATGTTCAACTTTTTTTAGAACGGGGAAGTAAGTGTTTTAATATTAGTGAATTAAAATTATCAAAACGTGCGGCCACACCAACAAATTTATATCCAATAACAAAAAAAGTGCAAAATGTTTTAGCAGCTTTTTTAGTTGCTCATGAAAATGTTTTTTATCTTTTAGATCAACAACAAAAAATAAATCCATATTACTTATCAAACCCCAAACCAACAAAACTAGATACTAAAATTAGTATCTATGAAAACGATCAAATGATCACTGATGTAGTTAAAGATTGCTTTTTAAGTGATGAAGCAATTAGTGATTTTAAAAAAATTAATATGTACGCAAATGAATTTGATAATGAAATGCTAAAAATTAATAAAAATCACGATGATTCACAATTAGAATTAATTGATGAAGAGGAAGAAAAAAAATAA", "fmax": "533999", "accession": "NC_002162.1", "fmin": "531446", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Ureaplasma parvum", "NCBI_taxonomy_id": "134821", "NCBI_taxonomy_cvterm_id": "40416"}, "protein_sequence": {"accession": "WP_010891786.1", "sequence": "MSVNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIRACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISELKLSKRAATPTNLYPITKKVQNVLAAFLVAHENVFYLLDQQQKINPYYLSNPKPTKLDTKISIYENDQMITDVVKDCFLSDEAISDFKKINMYANEFDNEMLKINKNHDDSQLELIDEEEEKK"}}}}}}}, "2734": {"$update": {"ARO_category": {"$delete": ["36189", "36193", "35960"]}}}, "2731": {"$update": {"ARO_category": {"$delete": ["36017", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935", "36526"]}}}, "2732": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "40727", "36310", "35960", "35923", "35935"]}}}, "2733": {"$update": {"ARO_category": {"$delete": ["36017", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935", "36526"]}}}, "37": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "35972", "35944", "36218", "35920", "36296", "36526", "35936"]}}}, "876": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "36193", "40727", "36310", "35960", "35923", "35935"]}}}, "870": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2743": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "2033": {"$update": {"ARO_category": {"$delete": ["35944", "40514", "36189", "40518", "36242", "35939", "35951", "35972", "41239", "35935", "35936", "36192", "36193", "36310", "36218", "37250", "36659", "35960", "36174", "35923", "35920", "36526", "36296"]}}}, "2744": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "2747": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "2746": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "36526"]}}}, "2748": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "35923", "35935", "36526"]}}}, "890": {"$update": {"model_sequences": {"$update": {"sequence": {"5862": {"dna_sequence": {"partial": "1", "sequence": "TATTATCTCCCTGTTAGCCACCCTGCCGCTGGCGGTACACGCCAGCCCGCAGCCGCTTGAGCAAATTAAACAAAGCGAAAGCCAGCTGTCGGGCCGCGTAGGCATGATAGAAATGGATCTGGCCAGCGGCCGCACGCTGACCGCCTGGCGCGCCGATGAACGCTTTCCCATGATGAGCACCTTTAAAGTAGTGCTCTGCGGCGCAGTGCTGGCGCGGGTGGATGCCGGTGACGAACAGCTGGAGCGAAAGATCCACTATCGCCAGCAGGATCTGGTGGACTACTCGCCGGTCAGCGAAAAACACCTTGCCGACGGCATGACGGTCGGCGAACTCTGCGCCGCCGCCATTACCATGAGCGATAACAGCGCCGCCAATCTGCTGCTGGCCACCGTCGGCGGCCCCGCAGGATTGACTGCCTTTTTGCGCCAGATCGGCGACAACGTCACCCGCCTTGACCGCTGGGAAACGGAACTGAATGAGGCGCTTCCCGGCGACGCCCGCGACACCACTACCCCGGCCAGCATGGCCGCGACCCTGCGCAAGCTGCTGATCAGCCAGCGTCTGAGCGCCCGTTCGCAACGGCAGCTGCTGCAGTGGATGGTGGACGATCGGGTCGCCGGACCGTTGATCCGCTCCGTGCTGCCGGCGGGCTGGTTTATCGCCGATAAGACCGGAGCTGGCGAGCGGGGTGCGCGCGGCATTGTCGCCCTGCTTGGCCCGAATAACAA", "fmax": "729", "accession": "AY590467", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella pneumoniae", "NCBI_taxonomy_id": "573", "NCBI_taxonomy_cvterm_id": "35915"}, "protein_sequence": {"accession": "AAT01223.1", "sequence": "IISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLISQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVALLGPNN"}}}}}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "450"}}}}}}, "1608": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "35960", "36189", "35923", "35935"]}}}, "1600": {"$update": {"ARO_category": {"$delete": ["36017", "36193", "37014", "36189", "35951", "41239", "35920", "36296"]}}}, "1975": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "1971": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "150"}}}}}}, "351": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "500"}}}}}}, "350": {"$update": {"ARO_category": {"$delete": ["36242", "35919"]}}}, "801": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "350"}}}}}}, "805": {"$update": {"ARO_category": {"$delete": ["37250", "35939", "36193", "40727", "35960", "35923"]}}}, "1789": {"$update": {"model_sequences": {"$update": {"sequence": {"5842": {"dna_sequence": {"partial": "0", "sequence": "ATGGCTCTGGCACTCGTTGGCGAAAAAATTGACAGAAACCGTTTCACCGGTGAGAAAATTGAAAATAGTACATTTTTTAACTGTGATTTTTCAGGTGCCGACCTAAGTGGTACTGAATTTATCGGCTGTCAGTTCTATGATCGTGAAAGCCAGAAAGGGTGCAATTTTAGTCGTGCAATGCTGAAAGATGCCATTTTTAAAAGCTGTGATTTATCCATGGCGGATTTTCGCAATGCCAGTGCGCTGGGCATTGAAATTCGCCACTGCCGCGCACAAGGTGCAGATTTCCGCGGCGCAAGCTTTATGAATATGATCACTACACGCACCTGGTTTTGCAGCGCATATATCACTAACACAAATCTAAGCTACGCCAATTTTTCGAAAGTCGTGCTGGAAAAGTGTGAGCTGTGGGAAAACCGTTGGATGGGTGCCCAGGTACTGGGCGCGACGTTCAGTGGTTCAGATCTCTCCGGCGGCGAGTTTACGACTTTCGACTGGCGAGCAGCAAACTTCACACATTGCGATCTGACCAATTCGGAGTTGGGTGACTTAGATATTCGGGGCGTTGATTTACAAGGCGTTAAGTTGGACAACTACCAGGCATCGTTGCTCATGGAACGTCTTGGCATCGCGGTCATTGGTTAA", "fmax": "681", "accession": "NG_050507.1", "fmin": "36", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli", "NCBI_taxonomy_id": "562", "NCBI_taxonomy_cvterm_id": "35914"}, "protein_sequence": {"accession": "WP_063866105.1", "sequence": "MALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNASALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGAQVLGATFSGSDLSGGEFTTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLGIAVIG"}}}}}}}, "1786": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "40727", "36310", "35960", "35923"]}}}, "957": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "3329": {"$update": {"model_sequences": {"$update": {"sequence": {"5889": {"dna_sequence": {"partial": "0", "sequence": "ATGGATCAAAAAAACAACAACCTCTTTCAAAAGGCAATTGAAGAAGTCTTTGCAGTTAGCTTTAGTAAGTATGCTAAATACATCATCCAAGATAGAGCTTTACCTGATCTAAGAGATGGGTTAAAACCAGTACAAAGACGGATCTTATATGGGATGTTTCAAATGGGCTTAAAACCCACCACTCCCTATAAAAAATCAGCCCGTGCTGTTGGGGAGATCATGGGGAAATACCACCCCCATGGTGATAGTTCCATTTATGATGCAATTATCAGAATGTCCCAAAGCTGAAAGAACAACTGAACAACTGTTTCTATCCATGGTAACAATGGTTCAGTGGATGGGGATAATGCTGCAGCAATGCGTTACACAGAAACCCGCTTAAGCTTGTATGGATTTGAACTATTAAAAGACATTGATAAAAAGTTAGTTAGTTTTATCAATAACTTTGATGATAGTGAAAAAGAACCAACGGTTTTACCAACCTTACTGCCTAACCTCTTTATCAATGGTGCGAGTGGGATAGCTGCTGGATATGCAACTAATATTGCTCCCCATAACACTAATGAACTATTAGATAGTCTTTGCTTGCGAATAGACCAACCTAATTGTGAACTTAAACAAATTTTAAAAATTGTTAAAGGTCCTGATTTTCCAACAGGGGGTAATGTTTATTTTGAAAAGAGTTTAAGTGATATTTATCAAGCAGGCAAAGGTAAATTTATTATCCAAGCTAAGTATGAAGTTAACAAGAACTTAAACCAGATTGAAATTACCCAAATCCCTTATGAAACACTGAAAGCTAACATTGTCAAACAAATTGAAGAGATTATCTTTGACAATAAACTATCTGCTATTGAAAGTGTCATTGATAGTTCAGATCGCAACGGCATTAGGATCATTATTAAACACAAGGACTTTTTGCCTGCTGAGAAGATCATGGCCTTTTTGTTTAAACACACCCAACTCCAAGTGAACTTTAACCTTAATAACACCGTGATTGCTAACCGCTTTCCCATCCAAATTGGTTTACTAAGTTACCTCGATCATTTTTTAAAGTTTTGTCATGAACTAATTATTAATAAAGCTAAGTATGAACTTGAGCTTGCAAGCAAGCGCTTGGAAATTATTTTAGGACTAATTAAAGCGATTAGTATCATTGATAAAATCATCAAATTAATTAGATCAGCAGTTGACAAAAGTGATGCAAGAGAAAAGTTAATTGATAACTTTAAATTTACTTTTAACCAAGCAGAGGCAATTGTTAGTTTGCGACTTTACCAACTAACTAACACTGATATTTTTGAACTTAACCAAGAACAAAATGAACTTGAAAAAACTGTGATTAGTTCAGAGCAACTAATTGCTAGTGAAAAAGCAAGAAACAAACTCCTAAAAAAACAGTTTGAAGGTTATAAAAAGCAGTTTCACCAGCAACGAAGGTCACAAATATGTGGCTTTATTAACCAAAAAAAGGTGGAGGAAAGTGAGCTAATTGAAAACAAAACTTATGGGGTTTTAATCACTAAAGCTGGTAACTACCATAAGTTTGAATCTAACCAACTATTAAAAAGCACCACTGATTTTAAAAGTGAGAGTGACACAATTATCTTTGCACAAACTATTGCTAATACCGACCAAATTTTTATTGTCACTTCACTAGGTAACATTATTAATATCCCTGTTTATAAATTAGCTTTCAATTCCAAAAATAAACTAGCAAGTTTAGTTAGTAAAAAACCAATCCTTTTGGAGTATGAAACGATTGTTTTTGTTGGAACAATGAACAGTGTAAACCAACCAATCCTTGTTTTAACTTCCAAACTAGGAATGGTTAAACGGATTGATTTAACCAAACTTAACATTAAGCCACTTAAAGCTACTTTGTGTATCTCACTCCGTGATAAAGACCATTTAGTAAGTGCATTTTTACAACAAGATGATAAACTGATCTGTTTAGTGTCTGATCACAACTATTACACTGTTTTTCACACCAATGAGATCCCATTAATTAGTAGTAAGGGGATGGGAGTGAAGGGGATGAAGTTAAAACTAGAGGATCAAATTAAGTTTGTTGTTGCTTTTGAAGCTAATGAACCGTTAGTGATGATATGTAGTGATGGTAGTGTCATTAACTTAAAACAAACTGAACTAGTTGTAGTTAGCAGGATGGCAACTGCAAAAAAACTGCCTGTTAAGAAAGCAATTAACTATTGTTTTAGTGATGCAACTAACACCCAGTTAATTAATTTTCAGGGTAAGAACGGTAGTAAATTAATTACAACTAGTGAACTGAACCAGATGAGTAAAACTGCAATTAGTCAAACCAGGTTTAACAAACTTAATTAG", "fmax": "244569", "accession": "NC_000908.2", "fmin": "242223", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Mycoplasma genitalium", "NCBI_taxonomy_id": "2097", "NCBI_taxonomy_cvterm_id": "42595"}, "protein_sequence": {"accession": "WP_010869372.1", "sequence": "MDQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFIIQAKYEVNKNLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELIINKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQFHQQRRSQICGFINQKKVEESELIENKTYGVLITKAGNYHKFESNQLLKSTTDFKSESDTIIFAQTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPILLEYETIVFVGTMNSVNQPILVLTSKLGMVKRIDLTKLNIKPLKATLCISLRDKDHLVSAFLQQDDKLICLVSDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEANEPLVMICSDGSVINLKQTELVVVSRMATAKKLPVKKAINYCFSDATNTQLINFQGKNGSKLITTSELNQMSKTAISQTRFNKLN"}}}}}, "model_name": "Mycoplasma Genitalium parC mutations confers resistance to Moxifloxacin"}}, "2323": {"$update": {"ARO_category": {"$delete": ["36189", "35935", "36242", "36526", "35919"]}}}, "2321": {"$update": {"ARO_category": {"$delete": ["36189", "35960"]}}}, "1773": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2324": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "1074": {"$update": {"model_sequences": {"$update": {"sequence": {"5871": {"dna_sequence": {"partial": "1", "sequence": "TGTTATCTCCCTGTTAGCCACCCTGCCACTGGTGGTATACGCCGGTCCACAGCCGCTTGAGCAGATTAAACAAAGCGAAAGCCAGCTGTCGGGCCGCGTGGGGATGGTGGAAATGGATCTGGCCAGCGGCCGCACGCTGGCCGCCTGGCGCGCCGATGAACGCTTTCCCATGGTGAGCACCTTTAAAGTGCTGCTGTGCGGCGCGGTGCTGGCGCGGGTGGATGCCGGGCTCGAACAACTGGATCGGCGGATCCACTACCGCCAGCAGGATCTGGTGGACTACTCCCCGGTCAGCGAAAAACACCTTGTCGACGGGATGACGATCGGCGAACTCTGCGCCGCCGCCATCACCCTGAGCGATAACAGCGCTGGCAATCTGCTGCTGGCCACCGTCGGCGGCCCCGCGGGATTAACTGCCTTTCTGCGCCAGATCGGTGACAACGTCACCCGTCTTGACCGCTGGGAAACGGCACTGAATGAGGCGCTTCCCGGCGACGCGCGCGACACCACCACCCCGGCCAGCATGGCCGCCACGCTGCGCAAACTACTGACCGCGCAGCATCTGAGCGCCCGTTCGCAACAGCAACTCCTGCAGTGGATGGTGGACGATCGGGTTGCCGGCCCGCTGATCCGCGCCGTGCTGCCGCCGGGCTGGTTTATCGCCGACAAAACCGGGGCTGGCGAACGGGGTGCGCGCGGCATTGTCGCCCTGCTCGGCCCGGACGGCAAACCGGAGCGCATTGTGGTGATCTATCTGCGGGATACCCCGGCGAGTATGGCCGAGCGTAATCAACAAATCGCCGGGATCGGCGCGGCGCTGATC", "fmax": "823", "accession": "AY130286", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella pneumoniae", "NCBI_taxonomy_id": "573", "NCBI_taxonomy_cvterm_id": "35915"}, "protein_sequence": {"accession": "AAN05030.1", "sequence": "VISLLATLPLVVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTGAGERGARGIVALLGPDGKPERIVVIYLRDTPASMAERNQQIAGIGAALI"}}}}}}}, "1670": {"$update": {"ARO_category": {"$delete": ["36193", "37250", "40727", "35935", "35960"], "$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "284": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "36193", "40727", "36310", "35960", "35923", "35935"]}}}, "1158": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "500"}}}}}}, "1092": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "1550": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "36526"]}}}, "1554": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "1559": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935", "36526"]}}}, "56": {"$update": {"model_sequences": {"$update": {"sequence": {"5897": {"dna_sequence": {"partial": "1", "sequence": "TTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATAAGTTGGGTGCACGAGTGGGTTACATCGAGCTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGTGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACCCGCCTTGATAGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGCAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGATCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACA", "fmax": "785", "accession": "AF527798.1", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli", "NCBI_taxonomy_id": "562", "NCBI_taxonomy_cvterm_id": "35914"}, "protein_sequence": {"accession": "AAO33760.1", "sequence": "FFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNR"}}}}}}}, "2396": {"$update": {"model_sequences": {"$update": {"sequence": {"5851": {"dna_sequence": {"partial": "0", "sequence": "ATGAAAACATTTGCCGCATATGTAATTATCGCGTGTCTTTCGAGTACGGCATTAGCTGGTTCAATTACAGAAAATACGTCTTGGAACAAAGAGTTCTCTGCCGAAGCCGTCAATGGTGTCTTCGTGCTTTGTAAAAGTAGCAGTAAATCCTGCGCTACCAATGACTTAGCTCGTGCATCAAAGGAATATCTTCCAGTATCAACATTTAAGATCCCCAGCGCAATTATCGGCCTAGAAACTGGTGTCATAAAGAATGAGCATCAGGTTTTCAAATGGGACGGAAAGCCAAGAGCCATGAAGCAATGGGAAAGAGACTTGACCTTAAGAGGGGCAATACAAGTTTCAGCTGTTCCCGTATTTCAACAAATCGCCAGAGAAGTTGGCGAAGTAAGAATGCAGAAATACCTTAAAAAATTTTCCTATGGCAACCAGAATATCAGTGGTGACATTGACAAATTCTGGTTGGAAGGCCAGCTTAGAATTTCCGCAGTTAATCAAGTGGAGTTTCTAGAGTCTCTATATTTAAATAAATTGTCAGCATCTAAAGAAAACCAGCTAATAGTAAAAGAGGCTTTGGTAACGGAGGCGGCACCTGAATATCTAGTGCATTCAAAAACTGGTTTTTCTGGTGTGGGAACTGAGTCAAATCCTGGTGTCGCATGGTGGGTTGGGTGGGTTGAGAAGGAGACAGAGGTTTACTTTTTCGCCTTTAACATGGATATAGACAACGAAAGTAAGTTGCCGCTAAGAAAATCCATTCCCACCAAAATCATGGAAAGTGAGGGCATCATTGGTGGCTAA", "fmax": "1977", "accession": "KT736121.1", "fmin": "1176", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Aeromonas sobria", "NCBI_taxonomy_id": "646", "NCBI_taxonomy_cvterm_id": "36957"}, "protein_sequence": {"accession": "AMB19637.1", "sequence": "MKTFAAYVIIACLSSTALAGSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPVSTFKIPSAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGDIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGIIGG"}}}}}}}, "2399": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "35923", "35935", "36526"]}}}, "1320": {"$update": {"ARO_category": {"$delete": ["36017", "36193", "37014", "36189", "35951", "41239", "35920", "36296"]}}}, "200": {"$update": {"model_sequences": {"$update": {"sequence": {"5873": {"dna_sequence": {"partial": "1", "sequence": "TCTCCCTGTTAGCCACCCTGCCACTGGCGGTATACGCCGGTCCACAGCCGCTTGAGCAGATTAAACAAAGCGAAAGCCAGCTGTCGGGCCGCGTGGGGATGGTGGAAATGGATCTGGCCAGCGGCCGCACGCTGGCGGCCTGGCGCGCCGATGAACGCTTTCCCATGGTGAGCACCTTTAAAGTGCTGCTGTGCGGCGCGGTGCTGGCGCGGGTGGATGCCGGGCTCGAACAACTGGATCGGCGGATCCACTACCGCCAGCAGGATCTGGTGGACTACTCCCCGGTCAGCGAAAAACACCTTACCGACGGGATGACGATCGGCGAACTCTGCGCCGCCGCCATCACCCTGAGCGATAACTGCGCTGGCAATCTGCTGCTGGCCACCGTCGGCGGCCCCGCGGGATTAACTGCCTTTCTGCGCCAGATCGGTGACAACGTCACCCGTCTTGACCGCTGGGA", "fmax": "460", "accession": "AY265889", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Enterobacter cloacae", "NCBI_taxonomy_id": "550", "NCBI_taxonomy_cvterm_id": "36884"}, "protein_sequence": {"accession": "AAP93847.1", "sequence": "SLLATLPLAVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTIGELCAAAITLSDNCAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRW"}}}}}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "275"}}}}}}, "2771": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "986": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "36526"]}}}, "2775": {"$update": {"ARO_category": {"$delete": ["36192", "35923", "37014", "40514", "36242", "35919", "35939", "36174", "36659", "40727", "36310", "35944", "35972", "41239", "36218", "40518", "35935", "35936"]}}}, "2789": {"$update": {"model_sequences": {"$update": {"sequence": {"5859": {"dna_sequence": {"partial": "0", "sequence": "GTGACCAAACTCAAACTTCTGGCACTTGGAGTGCTTATCGCAACGTCTGCAGGCGTAGCGCACGCTGAAGGTAAATTTTCCCTGGGCGCAGGCGTAGGTGTCGTTGAACACCCATATAAAGATTACGATACCGATGTTTACCCAGTACCGGTAATCAACTATGAAGGCGATAACTTCTGGTTCCGTGGCTTAGGTGGTGGTTACTACCTGTGGAATGACGCAACGGATAAACTTTCAATTACCGCTTACTGGTCGCCGCTTTACTTCAAAGCTAAAGACAGTGGCGATCACCAAATGCGTCACCTGGATGACCGTAAGAGCACCATGATGGCTGGTCTGTCTTATGCTCACTTTACCCAGTACGGTTACCTGCGTACCACCCTGGCTGGCGATACCCTGGATAACAGCAACGGCATCGTCTGGGATATGGCCTGGTTGTATCGTTACACCAACGGTGGCCTGACCGTGACTCCGGGTATTGGTGTGCAGTGGAACAGCGAAAACCAGAACGAATACTATTATGGCGTATCGCGCAAAGAGTCCGCTCGCAGCGGTCTGCGTGGCTATAACTCGAACGACAGCTGGAGCCCTTACCTGGAGCTGAGCGCCAGCTACAACTTCCTCGGCGACTGGAGTGTTTACGGTACCGCGCGCTACACCCGTCTGTCTGATGAAGTTACTGACAGCCCGATTGTGGATAAATCCTGGACTGGCCTGATTTCTACCGGGATCACCTACAAATTCTGA", "fmax": "2468214", "accession": "NC_002695.2", "fmin": "2467467", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli O157:H7 str. Sakai", "NCBI_taxonomy_id": "386585", "NCBI_taxonomy_cvterm_id": "36747"}, "protein_sequence": {"accession": "NP_310518", "sequence": "MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDTDVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHLDDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGIGVQWNSENQNEYYYGVSRKESARSGLRGYNSNDSWSPYLELSASYNFLGDWSVYGTARYTRLSDEVTDSPIVDKSWTGLISTGITYKF"}}}}}, "ARO_category": {"$update": {"41444": {"$update": {"category_aro_description": "The MltA-interacting Protein (MipA) family consists mainly of homologs to MipA and OmpV proteins. Proteins of this family, are predicted to form a beta-barrel."}}}}}}, "1256": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36218", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "41239"]}}}, "1252": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "36526"]}}}, "1523": {"$update": {"ARO_category": {"$delete": ["37250", "35939", "36193", "40727", "35960", "35923"]}}}, "2072": {"$update": {"ARO_category": {"$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "2075": {"$update": {"ARO_category": {"$delete": ["36192", "35923", "36193", "37014", "40514", "36242", "35919", "35939", "36174", "36659", "40727", "36310", "35944", "35972", "41239", "36218", "40518", "35935", "35936"]}}}, "1390": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "300": {"$update": {"model_sequences": {"$update": {"sequence": {"5868": {"dna_sequence": {"partial": "0", "sequence": "TTGAGCGTTTCGATCTTACCTGTGAAAGAACAAGACGCTGCCGACTGGCTAGCGCTGCGGAATCTTCTTTGGCTCGCGGATGATCACGCCTCGGAGATTGAGCAGTACTTCTCTGGTGGACTTGAGGGGCTTGTAGAAGTGCTCATCGCCCGTGATGCTACCGGCGCGGCTGTTGGGCATGTCGAACTCTCGATAAGACATGACTTGGAAGAACTCCAAGGAATCAAGACCGGCTACATCGAAGGCCTTTATGTGGCCCCAAGCCATCGATCAACAGACCTTGTGAGGCGTTTCTTGCGTGAGTCCGAGAAGTGGGCCCTAGAACAAGGGTGCAGCGCATTTGCCTCAGACAGAAGTGATCGGGTCATCACGCACCGCAAGTTCGCAGGCAGCGCCGTCTAA", "fmax": "502", "accession": "NG_048575.1", "fmin": "100", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Pseudomonas aeruginosa", "NCBI_taxonomy_id": "287", "NCBI_taxonomy_cvterm_id": "36752"}, "protein_sequence": {"accession": "WP_064190968.1", "sequence": "MSVSILPVKEQDAADWLALRNLLWLADDHASEIEQYFSGGLEGLVEVLIARDATGAAVGHVELSIRHDLEELQGIKTGYIEGLYVAPSHRSTDLVRRFLRESEKWALEQGCSAFASDRSDRVITHRKFAGSAV"}}}}}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "250"}}}}}}, "3264": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "150"}}}}}}, "3266": {"$update": {"ARO_category": {"$insert": {"40951": {"category_aro_name": "piperacillin-tazobactam", "category_aro_cvterm_id": "40951", "category_aro_accession": "3004021", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the penam beta-lactam antibiotic Piperacillin and the beta-lactamase inhibitor Tazobactam."}}}}}, "1938": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935", "36526"]}}}, "847": {"$update": {"model_sequences": {"$update": {"sequence": {"5865": {"dna_sequence": {"partial": "1", "sequence": "GGTTAAAAAATCACTGCGTCAGTTCACGCTGATGGCGACGGCAACCGTCACGCTGTTGTTAGGAAGTGTGCCGCTGTATGCGCAAACGGCGGACGTACAGCAAAAACTTGCCGAATTAGAGCGGCAGTCGGGAGGCAGACTGGGTGTGGCATTGATTAACACAGCAGATAATTCGCAAATACTTTATCGTGCTGATGAGCGCTTTGCGATGTGCAGCACCAGTAAAGTGATGGCCGCGGCCGCGGTGCTGAAGAAAAGTGAAAGCGAACCGAATCTGTTAAATCAGCGAGCTGAGATCAAAAAATCTGACCTTGTTAACTATAATCCGATTGCGGAAAAGCACGTCAATGGGACGATGTCACTGGCTGAGCTTAGCGCGGCCGCGCTACAGTACAGCGATAACGTGGCGATGAATAAGCTGATTGCTCACGTTGGCGGCCCGGCTAGCGTCACCGCGTTCGCCCGACAGCTGGGAGACGAAACGTTCCGTCTCGACCGTACCGAGCCGACGTTAAACACCGCCATTCCGGGCGATCCGCGTGATACCACTTCACCTCGGGCAATGGCGCAAACTCTGCGGAATCTGACGCTGGGTAAAGCATTGGGCGACAGCCAACGGGCGCAGCTGGTGACATGGATGAAAGGCAATACCACCGGTGCAGCGAGCATTCAGGCTGGACTGCCTGCTTCCTGGGTTGTGGGGGATAAAACCGGCAGCGGTGGCTATGGCACCACCAACGATATCGCGGTGATCTGGCCAAAAGATCGTGCGCCGCTGATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCAGAAAGCCGTCGCGATGTATTAGCGTCGGCGGCTAAAATCGTCACCAA", "fmax": "864", "accession": "JF274245", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Shigella sp. SH223", "NCBI_taxonomy_id": "1074434", "NCBI_taxonomy_cvterm_id": "39657"}, "protein_sequence": {"accession": "AEM44651.1", "sequence": "VKKSLRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRAEIKKSDLVNYNPIAEKHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVT"}}}}}}}, "826": {"$update": {"ARO_category": {"$delete": ["35923", "36193", "40514", "37014", "36659", "36174", "40727", "36310", "35944", "35972", "41239", "36218", "40518", "35936"]}}}, "2206": {"$update": {"ARO_category": {"$delete": ["36017", "36242", "35939", "36193", "40727", "36310", "35960", "35923", "35920", "35935", "36526"]}}}, "3503": {"$update": {"model_sequences": {"$update": {"sequence": {"5837": {"dna_sequence": {"partial": "0", "sequence": "ATGAACATTAAAGCACTCTTACTTATAACAAGCGCTATTTTTATTTCAGCCTGCTCACCTTATATAGTGACTGCTAATCCAAATCACAGTGCTTCAAAATCTGATGACAAAGCAGAGAAAATTAAAAATTTATTTAACGAAGCACACACTACGGGTGTTTTAGTTATCCATCAAGGTCAAACTCAACAAAGCTATGGTAATGATCTTGCTCGTGCTTCGACCGAGTATGTACCTGCTTCGACCTTCAAAATGCTTAATGCTTTGATCAGCCTTGAGCACCATAAGGCAACCACCACAGAAGTATTTAAATGGGATGGGGAAAAAAGGCTATTCCCAGAATGGGAAAAGAACATGACCCTAGGCGATGCTATGAAAGCTTCCGCTATTCCGGTTTATCAAGATTTAGCTCGTCGTATTGGACTTGAACTCATGTCTAAGGAAGTGAAGCGTGTTGGTTATGGCAATGCAGATATAGGTACCCAAGTCGATAATTTTTGGCTGGTGGGTCCTTTAAAAATTACTCCTCAGCAAGAGGCACAATTTGCTTACAAGCTAGCTAATAAAACGCTTCCATTTAGCCAAAAAGTCCAAGATGAAGTGCAATCCATGCTATTCATAGAAGAAAAGAATGGAAATAAAATATACGCAAAAAGTGGTTGGGGATGGGATGTAAACCCACAAGTAGGCTGGTTAACTGGATGGGTTGTTCAGCCTCAAGGGAATATTGTAGCGTTCTCCCTTAACTTAGAAATGAAAAAAGGAATACCTAGCTCTGTTCGAAAAGAGATTACTTATAAAAGCTTAGAACAATTAGGTATTTTATAG", "fmax": "838", "accession": "NG_049717.1", "fmin": "13", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Acinetobacter baumannii", "NCBI_taxonomy_id": "470", "NCBI_taxonomy_cvterm_id": "35507"}, "protein_sequence": {"accession": "WP_063862927.1", "sequence": "MNIKALLLITSAIFISACSPYIVTANPNHSASKSDDKAEKIKNLFNEAHTTGVLVIHQGQTQQSYGNDLARASTEYVPASTFKMLNALISLEHHKATTTEVFKWDGEKRLFPEWEKNMTLGDAMKASAIPVYQDLARRIGLELMSKEVKRVGYGNADIGTQVDNFWLVGPLKITPQQEAQFAYKLANKTLPFSQKVQDEVQSMLFIEEKNGNKIYAKSGWGWDVNPQVGWLTGWVVQPQGNIVAFSLNLEMKKGIPSSVRKEITYKSLEQLGIL"}}}}}}}, "374": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "500"}}}}}}, "2679": {"$update": {"ARO_category": {"$delete": ["36193", "37250", "40727", "35935", "35960"], "$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "988": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2729": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "36193", "40727", "36310", "35960", "35923", "35920", "35935", "36526"]}}}, "1989": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "755": {"$update": {"model_sequences": {"$update": {"sequence": {"5870": {"dna_sequence": {"partial": "1", "sequence": "GCCGTCTAGTTCTGCTGTCTTGTCTCTCATGGCCGCTGGCTGGCTTTTCTGCCACCGCGCTGACCAACCTCGTCGCGGAACCATTCGCTAAACTCGAACAGGACTTTGGCGGCTCCATCGGTGTGTACGCGATGGATACCGGCTCAGGCGCAACTGTAAGTTACCGCGCTGAGGAGCGCTTCCCACTGTGCAGCTCATTCAAGGGCTTTCTTGCTGCCGCTGTGCTGGCTCGCAGCCAGCAGCAGGCCGGCTTGCTGGACACACCCATCCGTTACGGCAAAAATGCGCTGGTTCCGTGGTCACCCATCTCGGAAAAATATCTGACAACAGGCATGACGGTGGCGGAGCTGTCCGCGGCCGCCGTGCAATACAGTGATAACGCCGCCGCCAATTTGTTGCTGAAGGAGTTGGGCGGCCCGGCCGGGCTGACGGCCTTCATGCGCTCTATCGGCGATACCACGTTCCGTCTGGACCGCTGGGAGCTGGAGCTGAACTCCGCCATCCCAGGCGATGCGCGCGATACCTCATCGCCGCGCGCCGTGACGGAAAGCTTACAAAAACTGACACTGGGCTCTGCACTGGCTGCGCCGCAGCGGCAGCAGTTTGTTGATTGGCTAAAGGGAAACACGACCGGCAACCACCGCATCCGCGCGGCGGTGCCGGCAGACTGGGCAGTCGGAGACAAAACCGGAACCTGCGGAGCGTATGGCACGGCAAATGACTATGCCGTCGTCTGGCCCACTGGGCGCGCACCTATTGTGTTGGCCGTCTACACCCGGGCGCCTAACAAGGATGACAAGTACAGCGAGGCCGTCATCGCCGCTGCGGCTAGACTCGCGCTCGAGGGATTGGGC", "fmax": "854", "accession": "FJ624872", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli", "NCBI_taxonomy_id": "562", "NCBI_taxonomy_cvterm_id": "35914"}, "protein_sequence": {"accession": "ACM91559.1", "sequence": "RLVLLSCLSWPLAGFSATALTNLVAEPFAKLEQDFGGSIGVYAMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGAYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKYSEAVIAAAARLALEGLG"}}}}}}}, "228": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "1194": {"$update": {"model_sequences": {"$update": {"sequence": {"5866": {"dna_sequence": {"partial": "1", "sequence": "TATCGCGTGTCTTTCGAGTACGGCATTAGCTGGTTCAATTACAGAAAATACGTCTTGGAACAAAGAGTTCTCTGCCGAAGCCGTCAATGGTGTCTTCGTGCTTTGTAAAAGTAGCAGTAAATCCTGCGCTACCAATGACTTAGCTCGTGCATCAAAGGAATATCTTCCAGCATCAACATTTAAGATCCCCAACGCAATTATCGGCCTAGAAACTGGTGTCATAAAGAATGAGCATCAGGTTTTCAAATGGGACGGAAAGCCAAGAGCCATGAAGCAATGGGAAAGAGACTTGACCTTAAGAGGGGCAATACAAGTTTCAGCTGTTCCCGTATTTCAACAAATCACCAGAGAAGTTGGCGAAGTAAGAATGCAGAAATACCTTAAAAAATTTTCCTATGGCAACCAGAATATCAGTGGTGGCATTGACAAATTCTGGTTGGAAGACCAGCTTAGAATTTCCGCAGTTAATCAAGTGGAGTTTCTAGAGTCTCTATATTTAAATAAATTGTCAGCATCTAAAGAAAACCAGCTAATAGTAAAAGAGGCTTTGGTAACGGAGGCGGCACCTGAATATCTAGTGCATTCAAAAACTGGTTTTTCTGGTGTGGGAACTGAGTCAAATCCTGGTGTCGCATGGTGGGTTGGGTGGGTTGAGAAGGAGACAGAGGTTTACTTTTTCGCCTTTAACATGGATATAGACAACGAAAGTAAGTTGCCGCTAAGAAAATCCATTCCCACCAAAATCATGGAAAGTGAGGGCATCATTGGTGGCTAA", "fmax": "775", "accession": "AF043100", "fmin": "0", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Pseudomonas aeruginosa", "NCBI_taxonomy_id": "287", "NCBI_taxonomy_cvterm_id": "36752"}, "protein_sequence": {"accession": "AAB97924.1", "sequence": "IACLSSTALAGSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQITREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEDQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGIIGG"}}}}}}}, "225": {"$update": {"model_sequences": {"$update": {"sequence": {"5891": {"dna_sequence": {"partial": "0", "sequence": "ATGGTTAAAAAATCACTGCGCCAGTTCACGCTGATGGCGACGGCAACCGTCACGCTGTTGTTAGGAAGTGTGCCGCTGTATGCGCAAACGGCGGACGTACAGCAAAAACTTGCCGAATTAGAGCGGCAGTCGGGAGGCAGACTGGGTGTGGCATTGATTAACACAGCAGATAATTCGCAAATACTTTATCGTGCTGATGAGCGCTTTGCGATGTGCAGCACCAGTAAAGTGATGGCCGCGGCCGCGGTGCTGAAGAAAAGTGAAAGCGAACCGAATCTGTTAAATCAGCGAGTTGAGATCAAAAAATCTGACCTTGTTAACTATAATCCGATTGCGGAAAAGCACGTCAATGGGACGATGTCACTGGCTGAGCTTAGCGCGGCCGCGCTACAGTACAGCGATAACGTGGCGATGAATAAGCTGATTGCTCACGTTGGCGGCCCGGCTAGCGTCACCGCGTTCGCCCGACAGCTGGGAGACGAAACGTTCCGTCTCGACCGTACCGAGCCGACGTTAAACACCGCCATTCCGGGCGATCCGCGTGATACCACTTCACCTCGGGCAATGGCGCAAACTCTGCGGAATCTGACGCTGGGTAAAGCATTGGGCGACAGCCAACGGGCGCAGCTGGTGACATGGATGAAAGGCAATACCACCGGTGCAGCGAGCATTCAGGCTGGACTGCCTGCTTCCTGGGTTGTGGGGGATAAAACCGGCAGCGGTGGCTATGGCACCACCAACGATATCGCGGTGATCTGGCCAAAAGATCGTGCGCCGCTGATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCAGAAAGCCGTCACGATGTATTAGCGTCGGCGGCTAAAATCGTCACCGACGGTTTGTAA", "fmax": "2381", "accession": "NZ_SQNR01000043.1", "fmin": "1505", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Enterobacteriaceae", "NCBI_taxonomy_id": "543", "NCBI_taxonomy_cvterm_id": "40532"}, "protein_sequence": {"accession": "WP_063860086.1", "sequence": "MVKKSLRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRHDVLASAAKIVTDGL"}}}}}}}, "1599": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "500"}}}}}}, "2213": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "40727", "35960", "35923", "35920", "35935"]}}}, "2212": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "40727", "35960", "35923", "35920", "35935"]}}}, "2211": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "40727", "35960", "35923", "35920", "35935"]}}}, "2217": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935"]}}}, "2216": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "35935"]}}}, "2219": {"$update": {"ARO_category": {"$delete": ["36017", "36242", "35939", "36193", "40727", "36310", "35960", "35923", "35920", "35935", "36526"]}}}, "1180": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "36193", "40727", "36310", "35960", "36189", "35920", "35935"]}}}, "1181": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "1744": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}}}, "2428": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "153": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "35923", "35935", "36526"]}}}, "1167": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "1209": {"$update": {"model_sequences": {"$update": {"sequence": {"5843": {"dna_sequence": {"partial": "0", "sequence": "ATGGCTCTGGCACTCGTTGGCGAAAAAATTGACAGAAACCGCTTCACCGGTGAGAAAATTGAAAATAGTACATTTTTTAACTGTGATTTTTCAGGTGCCGACCTGAGCGGCACTGAATTTATCGGCTGTCAGTTCTATGATCGTGAAAGCCAGAAAGGGTGCAATTTTAGTCGTACGATGCTGAAAGATGCCATTTTTAAAAGCTGTGATTTATCCATGGCGGATTTTCGCAATGCCAGTGCGCTTGGCATTGAAATTCGCCACTGTCGTGCGCAAGGCGCAGATTTCCGCGGCGCAAGCTTTATGAATATGATCACTACTCGCACCTGGTTTTGTAGTGCATATATCACTAACACAAATCTAAGCTACGCCAATTTTTCGAAAGTCGTGCTGGAAAAGTGTGAGCTGTGGGAAAACCGTTGGATGGGTGCCCAGGTACTGGGCGCGACGTTCAGTGGTTCAGATCTCTCCGGCGGCGAGTTTTCGACTTTCGACTGGCGAGCAGCAAACTTCACACATTGCGATCTGACCAATTCGGAGTTGGGTGACTTAGATATTCGGGGCGTTGATTTACAAGGCGTTAAGTTGGACAACTACCAGGCATCGTTGCTCATGGAACGTCTTGGCATCGCGGTGATTGGTTAA", "fmax": "681", "accession": "NG_050508.1", "fmin": "36", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Escherichia coli", "NCBI_taxonomy_id": "562", "NCBI_taxonomy_cvterm_id": "35914"}, "protein_sequence": {"accession": "WP_063866109.1", "sequence": "MALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRTMLKDAIFKSCDLSMADFRNASALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLGIAVIG"}}}}}}}, "154": {"$update": {"ARO_category": {"$delete": ["36296", "36174", "40514", "37014", "35919", "36659", "35944", "40727", "36310", "35960", "35972", "41239", "36218", "40518", "36526", "35936"]}}}, "603": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "36189", "36218", "35920", "40518", "36526", "35936"]}}}, "1213": {"$update": {"ARO_category": {"$delete": ["36193", "37250", "40727", "35935", "35960"], "$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "2433": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "2432": {"$update": {"model_sequences": {"$update": {"sequence": {"5852": {"dna_sequence": {"partial": "0", "sequence": "ATGGGCGGTGACGGCTGGAACTATACCGACAACTACATGACCGGTCGTACCAACGGCGTCGCAACCTACCGTAACTCCGACTTCTTCGGTCTGGTTGACGGTCTGAGCTTCGCGCTGCAGTACCAGGGTAAAAACGACCATGACCGTGCGATTCGCAAGCAGAATGGCGACGGCTTCAGCACCGCAGCCACCTACGCGTTCGACAACGGTATCGCACTGTCTGCAGGCTACTCCAGCTCTAACCGTAGCGTCGATCAGAAAGCTGACGGCAATGGCGACAAAGCCGAAGCCTGGGCGACCTCTGCAAAATATGACGCTAACAACATCTATGCGGCCGTCATGTACTCCCAGACTTACAACATGACTCCGGAAGAAGATAACCACTTCGCTGGTAAAACTCAGAACTTTGAAGCAGTTGTACAGTATCAGTTTGACTTCGGCCTGCGTCCGTCCATCGGCTACGTACAGACCAAAGGCAAGGACCTGCAGTCGCGTGCTGGCTTCTCCGGCGGCGATGCGGATCTGGTTAAATACATCGAAGTGGGTACCTGGTACTACTTTAACAAGAACATGAACGTCTACGCTGCGTATAAATTCAACCAGCTGGACGACAACGATTACACCAAAGCGGCTGGTGTCGCCACTGACGACCAGGCGGCCGTGGGTATCGTTTACCAGTTCTAA", "fmax": "1904991", "accession": "NC_016845.1", "fmin": "1904307", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella pneumoniae subsp. pneumoniae HS11286", "NCBI_taxonomy_id": "1125630", "NCBI_taxonomy_cvterm_id": "40663"}, "protein_sequence": {"accession": "YP_005226137.1", "sequence": "MGGDGWNYTDNYMTGRTNGVATYRNSDFFGLVDGLSFALQYQGKNDHDRAIRKQNGDGFSTAATYAFDNGIALSAGYSSSNRSVDQKADGNGDKAEAWATSAKYDANNIYAAVMYSQTYNMTPEEDNHFAGKTQNFEAVVQYQFDFGLRPSIGYVQTKGKDLQSRAGFSGGDADLVKYIEVGTWYYFNKNMNVYAAYKFNQLDDNDYTKAAGVATDDQAAVGIVYQF"}}}}}}}, "1206": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "609": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2435": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "40514", "36192", "41239", "35951", "40727", "36310", "35960", "35972", "35944", "36218", "35920", "40518", "36526", "36296"]}}}, "2434": {"$update": {"model_sequences": {"$update": {"sequence": {"5853": {"dna_sequence": {"partial": "0", "sequence": "ATGAAAGTTAAAGTACTGTCCCTCCTGGTACCGGCTCTGCTGGTAGCAGGCGCAGCAAATGCGGCTGAAATTTATAACAAAGACGGCAACAAATTAGACCTGTACGGTAAAATTGACGGTCTGCACTACTTCTCTGACGACAAGAGCGTCGACGGCGACCAGACCTACATGCGTGTAGGCGTGAAAGGCGAAACCCAGATCAACGACCAGCTGACCGGTTACGGCCAGTGGGAATACAACGTTCAGGCGAACAACACTGAAAGCTCCAGCGATCAGGCATGGACTCGTCTGGCATTCGCAGGCCTGAAATTTGGCGACGCGGGCTCTTTCGACTACGGTCGTAACTACGGCGTAGTATACGACGTAACGTCCTGGACCGACGTTCTGCCGGAATTCGGCGGCGACACCTACGGTTCTGACAACTTCCTGCAGTCCCGTGCTAACGGCGTTGCAACCTACCGTAACTCTGATTTCTTCGGTCTGGTTGACGGCCTGAACTTTGCTCTGCAGTATCAGGGTAAAAACGGCAGCGTCAGCGGCGAAGGCGCTCTGTCTCCTACCAACAACGGTCGTACCGCCTTGAAACAGAACGGCGACGGTTACGGTACTTCTCTGACCTATGACATCTATGATGGCATCAGCGCTGGTTTCGCATACTCTAACTCCAAACGTCTTGGCGACCAGAACAGCAAGCTGGCACTGGGTCGTGGCGACAACGCTGAAACCTACACCGGCGGTCTGAAATACGACGCGAACAACATCTACCTGGCCACTCAGTACACCCAGACCTACAACGCGACCCGCGCCGGTTCCCTGGGCTTTGCTAACAAAGCGCAGAACTTCGAAGTGGTTGCTCAGTACCAGTTCGACTTCGGTCTGCGTCCGTCCGTGGCTTACCTGCAGTCTAAAGGTAAGGATCTGGAAGGCTACGGCGACCAGGACATCCTGAAATATGTTGACGTTGGCGCGACCTACTACTTCAACAAAAACATGTCCACCTATGTTGACTACAAAATCAACCTGCTGGACGACAATAGCTTCACCCACAACGCCGGTATCTCTACCGACGACGTGGTTGCACTGGGCCTGGTTTACCAGTTCTAA", "fmax": "3728985", "accession": "NC_016845.1", "fmin": "3727881", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Klebsiella pneumoniae subsp. pneumoniae HS11286", "NCBI_taxonomy_id": "1125630", "NCBI_taxonomy_cvterm_id": "40663"}, "protein_sequence": {"accession": "YP_005228001.1", "sequence": "MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLYGKIDGLHYFSDDKSVDGDQTYMRVGVKGETQINDQLTGYGQWEYNVQANNTESSSDQAWTRLAFAGLKFGDAGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFLQSRANGVATYRNSDFFGLVDGLNFALQYQGKNGSVSGEGALSPTNNGRTALKQNGDGYGTSLTYDIYDGISAGFAYSNSKRLGDQNSKLALGRGDNAETYTGGLKYDANNIYLATQYTQTYNATRAGSLGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDLEGYGDQDILKYVDVGATYYFNKNMSTYVDYKINLLDDNSFTHNAGISTDDVVALGLVYQF"}}}}}}}, "1894": {"$update": {"ARO_category": {"$delete": ["36242", "35919", "35939", "36193", "40727", "36310", "35923", "35935"]}}}, "1897": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2130": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "36526"]}}}, "44": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "36193", "40727", "36310", "35960", "36189", "35920", "35935"]}}}, "45": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36218", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "43": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "35960", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "2138": {"$update": {"ARO_category": {"$insert": {"40924": {"category_aro_name": "amoxicillin-clavulanic acid", "category_aro_cvterm_id": "40924", "category_aro_accession": "3003997", "category_aro_class_name": "Antibiotic", "category_aro_description": "An antibiotic cocktail containing the beta-lactam antibiotic Amoxicillin and the beta-lactamase inhibitor Clavulanic Acid (potassium clavulanate)."}}}}}, "2139": {"$update": {"model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "450"}}}}}}, "1445": {"$update": {"ARO_category": {"$delete": ["37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35935", "36526"]}}}, "1442": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36218", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "36526", "41239"]}}}, "1292": {"$update": {"model_sequences": {"$update": {"sequence": {"5883": {"dna_sequence": {"partial": "1", "sequence": "GGTTAAAAAATCACTGCGTCAGTTCACGCTGATGGCGACGGCAACCGTCACGCTGTTGTTAGGAAGTGTGCCGCTGTATGCGCAAACGGCGGACGTACAGCAAAAACTTGCCGAATTAGAGCGGCAGTCGGGAGGCAGACTGGGTGTGGCATTGATTAACACAGCAGATAATTCGCGAATACTTTATCGTGCTGATGAGCGCTTTGCGATGTGCAGCACCAGTAAAGTGATGGCCGCGGCCGCGGTGCTGAAGAAAAGTGAAAGCGAACCGAATCTGTTAAATCAGCGAGTTGAGATCAAAAAATCTGACCTTGTTAACTATAATCCGATTGCGGAAAAGCACGTCAATGGGACGATGTCACTGGCTGAGCTTAGCGCGGCCGCGCTACAGTACAGCGATAACGTGGCGATGAATAAGCTGATTGCTCACGTTGGCGGCCCGGCTAGCGTCACCGCGTTCGCCCGACAGCTGGGAGACGAAACGTTCCGTCTCGACCGTACCGAGCCGACGTTAAACACCGCCATTCCGGGCGATCCGCGTGATACCACTTCACCTCGGGCAATGGCGCAAACTCTGCGGAATCTGACGCTGGGTAAAGCATTGGGCGACAGCCAACGGGCGCAGCTGGTGACATGGATGAAAGGCAATACCACCGGTGCAGCGAGCATTCAGGCTGGACTGCCTGCTTCCTGGGTTGTGGGGGATAAAACCGGCAGCGGTGGCTATGGCACCACCAACGATATCGCGGTGATCTGGCCAAAAGATCGTGCGCCGCTGATTCTGGTCACTTACTTCACCCAGCCTCAACCTAAGGCAGAAAGCCGTCGCGATGTATTAGCGTCGGCGGCTAAAATCGTCACCAAA", "fmax": "865", "accession": "JF274248.1", "fmin": "0", "strand": "-"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Shigella sp. SH361", "NCBI_taxonomy_id": "1074437", "NCBI_taxonomy_cvterm_id": "39658"}, "protein_sequence": {"accession": "AEM44654.1", "sequence": "VKKSLRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSRILYRADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVTK"}}}}}}}, "2724": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35939", "36193", "40727", "36310", "35960", "35920", "35935", "36526"]}}}, "2720": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "35939", "36193", "40727", "36310", "35960", "35920", "35935", "36526"]}}}, "2643": {"$update": {"ARO_category": {"$delete": ["36017", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "2644": {"$update": {"ARO_category": {"$delete": ["36017", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "1150"}}}}}}, "2645": {"$update": {"ARO_category": {"$delete": ["36017", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "2646": {"$update": {"ARO_category": {"$delete": ["36017", "37014", "35919", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "487": {"$update": {"ARO_category": {"$delete": ["36017", "36189", "37014", "36192", "36193", "35951", "41239", "35920", "36296"]}}}, "486": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}, "model_param": {"$update": {"blastp_bit_score": {"$update": {"param_value": "750"}}}}}}, "1806": {"$update": {"model_sequences": {"$update": {"sequence": {"5856": {"dna_sequence": {"partial": "0", "sequence": "ATGAAAACATTTGCCGCATATGTAATTATCGCGTGTCTTTCGAGTACGGCATTAGCTGGTTCAATTACAGAAAATACGTCTTGGAACAAAGAGTTCTCTGCCGAAGCCGTCAATGGTGTCTTCGTGCTTTGTAAAAGTAGCAGTAAATCCTGCGCTACCAATGACTTAGCTCGTGCATCAAAGGAATATCTTCCAGCATCAACATTTAAGATCCCCAACGCAATTATCGGCCTAGAAACTGGTGTCATAAAGAATGAGCATCAGGTTTTCAAATGGGACGGAAAGCCAAGAGCCATGAAGCAATGGGAAAGAGACTTGACCTTAAGAGGGGCAATACAAGTTTCAGCTGTTCCCGTATTTCAACAAATCGCCAGAGAAGTTGGCGAAGTAAGAATGCAGAAATACCTTAAAAAATTTTCCTATGGCAACCAGAATATCAGTGGTGGCATTGACAAATTCTGGTTGGAAGACCAGCTTAGAATTTCCGCAGTTAATCAAGTGGAGTTTCTAGAGTCTCTATATTTAAATAAATTGTCAGCATCTAAAGAAAACCAGCTAATAGTAAAAGAGGCTTTGGTAACGGAGGCGGCACCTGAATATCTAGTGCATTCAAAAACTGGTTTTTCTGGTGTGGGAACTGAGTCAAATCCTGGTGTCGCATGGTGGGTTGGGTGGGTTGAGAAGGAGACAGAGGTTTACTTTTTCGCCTTTAACATGGATATAGACAACGAAAGTAAGTTGCCGCTAAGAAAATCCATTCCCACCAAAATCATGGAAAGTGAGGGCATCATTGGTGGCTAA", "fmax": "2622", "accession": "KJ420612.1", "fmin": "1821", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Pseudomonas aeruginosa", "NCBI_taxonomy_id": "287", "NCBI_taxonomy_cvterm_id": "36752"}, "protein_sequence": {"accession": "AHX74209.1", "sequence": "MKTFAAYVIIACLSSTALAGSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEDQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGIIGG"}}}}}}}, "1808": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36193", "35972", "36296", "35919", "36192", "41239", "35951", "40727", "36310", "40514", "35944", "36218", "35920", "40518", "36526", "35936"]}}}, "1366": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "35920", "40518", "41239"]}}}, "2003": {"$update": {"ARO_category": {"$delete": ["36017", "36659", "36174", "36218", "36193", "35972", "36296", "35919", "36192", "36189", "35951", "40727", "36310", "35960", "40514", "35944", "35936", "40518", "36526", "41239"]}}}, "476": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "35920", "36526"]}}}, "1719": {"$update": {"ARO_category": {"$delete": ["36017", "37250", "36242", "35919", "35939", "36193", "40727", "36310", "35960", "36189", "35923", "36526"]}}}, "1368": {"$update": {"ARO_category": {"$delete": ["36189", "35960"]}}}}, "$delete": ["370", "1477"], "$insert": {"3629": {"model_id": "3629", "ARO_accession": "3004833", "model_param": {"blastp_bit_score": {"param_value": "1475", "param_type_id": "40725", "param_type": "BLASTP bit-score", "param_description": "A score is a numerical value that describes the overall quality of an alignment with higher numbers correspond to higher similarity. The bit-score (S) is determined by the following formula: S = (\u03bb \u00d7 S \u2212 lnK)/ ln2 where \u03bb is the Gumble distribution constant, S is the raw alignment score, and K is a constant associated with the scoring matrix. Many AMR detection models use this parameter, including the protein homolog and protein variant models. The BLASTP bit-score parameter is a curated value determined from BLASTP analysis of the canonical reference sequence of a specific AMR-associated protein against the database of CARD reference sequence. This value establishes a threshold for computational prediction of a specific protein amongst a batch of submitted sequences."}, "snp": {"param_type": "single resistance variant", "param_value": {"9243": "L421P"}, "clinical": {"9243": "L421P"}, "param_type_id": "36301", "param_description": "A nucleotide or amino acid substitution that confers elevated resistance to antibiotic(s) relative to wild type. The most common type encoded in the CARD is an amino acid substitution gleaned from the literature with format [wild-type][position][mutation], e.g. R184Q. When present in the associated gene or protein, a single resistance variant confers resistance to an antibiotic drug or drug class. Single resistance variants are used by the protein variant and rRNA mutation models to detect antibiotic resistance from submitted sequences."}}, "ARO_description": "Point mutation in Neisseria gonorrhoea PBP1 (ponA) decreases affinity between beta-lactam antibiotic molecule and PBP1, thereby conferring resistance to beta-lactam.", "model_sequences": {"sequence": {"5846": {"dna_sequence": {"partial": "0", "sequence": "ATGATTAAAAAGATTTTAACGACTTGTTTTGGTTTGGTTTTTGGGTTTTGTGTATTTGGAGTGGGTTTGGTTGCCATTGCTATTTTGGTAACGTATCCGAAACTGCCGTCTTTGGATTCTTTGCAGCATTACCAGCCTAAAATGCCGTTGACTATTTATTCGGCGGATGGGGAAGTCATCGGTATGTATGGGGAGCAGCGGCGCGAATTTACAAAAATCGGCGATTTCCCAGAGGTGTTGCGGAATGCGGTTATCGCCGCCGAGGATAAACGCTTTTACCGGCATTGGGGGGTGGATGTTTGGGGTGTTGCCCGCGCTGCCGTCGGCAATGTCGTGTCCGGCAGCGTGCAGTCGGGTGCGAGTACGATTACGCAGCAGGTGGCGAAAAATTTTTATTTGAGCAGTGAAAAAACGTTCACACGCAAATTCAATGAGGTGTTGCTTGCCTATAAAATCGAGCAGTCTTTAAGCAAAGACAAAATCCTCGAGTTGTATTTCAATCAGATTTACCTCGGTCAGCGCGCCTATGGTTTTGCATCTGCCGCGCAAATCTATTTCAATAAGAATGTCCGAGATTTGACTTTGGCGGAAGCCGCCATGCTTGCGGGACTGCCCAAGGCTCCGTCTGCCTATAATCCGATTGTTAATCCAGAACGTGCCAAGTTGCGCCAGAAGTATATTTTGAACAATATGCTCGAGGAGAAGATGATTACCGTGCAACAGCGCGATCAGGCGTTGAATGAGGAACTGCATTACGAGCGGTTTGTTCGGAAAATCGATCAGAGTGCTTTATATGTGGCGGAAATGGTGCGTCAGGAACTGTATGAGAAATACGGTGAAGATGCCTATACGCAGGGTTTTAAGGTTTATACCACGGTCCGCGCCGATCATCAGAAGGTGGCAACCGAGGCATTGCGCAAGGCTCTACGGAATTTCGATCGCGGCAGCAGCTACCGCGGTGCGGAAAACTATATCGATTTGAGTAAGAGTGAAGATGTCGAGGAGACTGTCAGCCAGTATCTGTCGGGACTCTATACCGTCGATAAAATGGTTCCCGCCGTTGTGTTGGATGTGACTAAAAAGAAAAATGTCGTCATACAGCTGCCCGGCGGCAGGCGGGTTACGCTTGACAGGCGCGCCTTGGGTTTTGCGGCCCGCGCGGTCAATAATGAAAAAATGGGGGAGGACCGTATCCGCAGGGGCGCGGTCATCCGTGTCAAAAACAACGGCGGGCGTTGGGCGGTGGTTCAAGAGCCGTTGCTGCAGGGGGCTTTGGTTTCGCTGGATGCAAAAACCGGAGCTGTGCGCGCGCTGGTCGGCGGTTATGATTTTCACAGCAAAACATTCAATCGTGCCGTTCAGGCAATGCGGCAGCCGGGTTCGACCTTTAAGCCGTTTGTCTATTCGGCGGCATTATCTAAGGGGATGACCGCGTCCACAGTGGTTAACGATGCGCCGATTTCCCTGCCGGGGAAAGGGCCGAACGGTTCGGTTTGGACACCTAAAAATTCAGACGGCAGATATTCCGGCTACATTACTTTGAGACAGGCTCTGACGGCTTCCAAGAATATGGTTTCCATCCGTATTTTGATGTCTATCGGTGTCGGTTACGCGCAACAGTATATCCGGCGTTTCGGCTTCAGGTCGTCCGAGCTGCCGGCAAGCCTGTCTATGGCTTTAGGTACGGGCGAGACAACGCCGTTGAAAGTGGCGGAGGCATATAGCGTATTTGCGAACGGCGGATATAGGGTTTCTTCGCACGTAATCGATAAGATTTATGACAGAGACGGCAGGTTGCGCGCCCAAATGCAACCTTTGGTGGCCGGGCAAAATGCGCCTCAGGCAATCGATCCGCGCAATGCCTATATTATGTATAAGATTATGCAGGATGTGGTCCGTGTTGGTACGGCAAGGGGGGCAGCTGCGTTGGGAAGAACGGATATTGCCGGTAAAACGGGTACGACCAATGACAATAAGGATGCGTGGTTTGTCGGTTTTAACCCTGATGTGGTTACTGCCGTATATATCGGCTTCGACAAACCTAAGAGTATGGGGCGTGTCGGCTACGGCGGTACGATTGCGGTGCCGGTTTGGGTGGACTATATGCGTTTTGCGTTGAAAGGAAAGCAGGGCAAGGGGATGAAAATGCCTGAAGGTGTGGTCAGCAGCAATGGCGAATACTATATGAAGGAACGTATGGTAACCGATCCGGGCTTGACGCTGGACAACAGCGGTATTGCGCCGCAACCTTCCCGACGGGCAAAAGAAGATGACGGGGGCGCGGCAGAAGGCGGACGGCAGGCGGCGGATGACGAAGTCCGCCAAGATATGCAGGAAACGCCGGTGCTTCCGAGTAATACTGGTTCCAAACAGCAGCAGTTGGATTCCCTGTTTTAA", "fmax": "2519", "accession": "U80933.1", "fmin": "122", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Neisseria meningitidis", "NCBI_taxonomy_id": "487", "NCBI_taxonomy_cvterm_id": "36753"}, "protein_sequence": {"accession": "AAB52541.1", "sequence": "MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHYQPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWGVARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPERAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVRKIDQSALYVAEMVRQELYEKYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVEETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEKMGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFNRAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRYSGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETTPLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLVAGQNAPQAIDPRNAYIMYKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPKSMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLTLDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF"}}}}, "ARO_category": {"36017": {"category_aro_name": "penam", "category_aro_cvterm_id": "36017", "category_aro_accession": "3000008", "category_aro_class_name": "Drug Class", "category_aro_description": "Penams, often referred to as penicillins, are a group of antibiotics derived from Penicillium fungi. Penicillin antibiotics are historically significant because they are the first drugs that were effective against many previously serious diseases such as syphilis and Staphylococcus infections. Penicillins are still widely used today, though many types of bacteria are now resistant. All penicillins are beta-lactam antibiotics in the penam sub-group, and are used in the treatment of bacterial infections caused by susceptible, usually Gram-positive, organisms."}, "40661": {"category_aro_name": "Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics", "category_aro_cvterm_id": "40661", "category_aro_accession": "3003938", "category_aro_class_name": "AMR Gene Family", "category_aro_description": "Mutations in PBP transpeptidases that change the affinity for penicillin thereby conferring resistance to penicillin antibiotics"}, "35951": {"category_aro_name": "cephalosporin", "category_aro_cvterm_id": "35951", "category_aro_accession": "0000032", "category_aro_class_name": "Drug Class", "category_aro_description": "Cephalosporins are a class of beta-lactam antibiotics, containing the beta-lactam ring fused with a dihydrothiazolidine ring. Together with cephamycins they belong to a sub-group called cephems. Cephalosporin are bactericidal, and act by inhibiting the synthesis of the peptidoglycan layer of bacterial cell walls. The peptidoglycan layer is important for cell wall structural integrity, especially in Gram-positive organisms."}, "35971": {"category_aro_name": "penicillin", "category_aro_cvterm_id": "35971", "category_aro_accession": "0000054", "category_aro_class_name": "Antibiotic", "category_aro_description": "Penicillin (sometimes abbreviated PCN) is a beta-lactam antibiotic used in the treatment of bacterial infections caused by susceptible, usually Gram-positive, organisms. It works by inhibiting the synthesis of the peptidoglycan layer of bacterial cell walls. The peptidoglycan layer is important for cell wall structural integrity, especially in Gram-positive organisms."}, "35997": {"category_aro_name": "antibiotic target alteration", "category_aro_cvterm_id": "35997", "category_aro_accession": "0001001", "category_aro_class_name": "Resistance Mechanism", "category_aro_description": "Mutational alteration or enzymatic modification of antibiotic target which results in antibiotic resistance."}, "35962": {"category_aro_name": "cephamycin", "category_aro_cvterm_id": "35962", "category_aro_accession": "0000044", "category_aro_class_name": "Drug Class", "category_aro_description": "Cephamycins are a group of beta-lactam antibiotics, very similar to cephalosporins. Together with cephalosporins, they form a sub-group of antibiotics known as cephems. Cephamycins are bactericidal, and act by inhibiting the synthesis of the peptidoglycan layer of bacterial cell walls. The peptidoglycan layer is important for cell wall structural integrity, especially in Gram-positive organisms. The 7-alpha-methoxy group increases resistance to beta-lactamases."}}, "ARO_name": "Neisseria gonorrhoea PBP1 conferring resistance to beta-lactam", "model_type": "protein variant model", "model_description": "The protein variant model is an AMR detection model. Protein variant models are similar to protein homolog models - they detect the presence of a protein sequence based on its similarity to a curated reference sequence, but secondarily search submitted query sequences for curated sets of mutations shown clinically to confer resistance relative to wild-type. This model includes a protein reference sequence, a curated BLASTP cut-off, and mapped resistance variants. Mapped resistance variants may include any or all of: single resistance variants, insertions, deletions, co-dependent resistance variants, nonsense SNPs, and/or frameshift mutations. Protein variant model matches to reference sequences are categorized on two criteria: strict and loose. A strict match has a BLASTP bitscore above the curated BLASTP cutoff value and contains at least one detected mutation from amongst the mapped resistance variants; a loose match has a BLASTP bitscore below the curated BLASTP cutoff value but still contains at least one detected mutation from amongst the mapped resistance variants. Regardless of BLASTP bitscore, if a sequence does not contain one of the mapped resistance variants, it is not considered a match and not detected by the protein variant model.", "ARO_id": "42963", "model_name": "Neisseria gonorrhoea PBP1 conferring resistance to beta-lactam", "model_type_id": "40293"}, "3630": {"model_id": "3630", "ARO_accession": "3004834", "model_param": {"blastp_bit_score": {"param_value": "580", "param_type_id": "40725", "param_type": "BLASTP bit-score", "param_description": "A score is a numerical value that describes the overall quality of an alignment with higher numbers correspond to higher similarity. The bit-score (S) is determined by the following formula: S = (\u03bb \u00d7 S \u2212 lnK)/ ln2 where \u03bb is the Gumble distribution constant, S is the raw alignment score, and K is a constant associated with the scoring matrix. Many AMR detection models use this parameter, including the protein homolog and protein variant models. The BLASTP bit-score parameter is a curated value determined from BLASTP analysis of the canonical reference sequence of a specific AMR-associated protein against the database of CARD reference sequence. This value establishes a threshold for computational prediction of a specific protein amongst a batch of submitted sequences."}, "snp": {"param_type": "single resistance variant", "param_value": {"9245": "A121D", "9244": "G120K"}, "clinical": {"9245": "A121D", "9244": "G120K"}, "param_type_id": "36301", "param_description": "A nucleotide or amino acid substitution that confers elevated resistance to antibiotic(s) relative to wild type. The most common type encoded in the CARD is an amino acid substitution gleaned from the literature with format [wild-type][position][mutation], e.g. R184Q. When present in the associated gene or protein, a single resistance variant confers resistance to an antibiotic drug or drug class. Single resistance variants are used by the protein variant and rRNA mutation models to detect antibiotic resistance from submitted sequences."}}, "ARO_description": "Point mutation in Neisseria gonorrhoea porB gene (penB mutation) decreases affinity between beta-lactam antibiotic molecule and pore restriction zone, thereby conferring resistance to beta-lactam.", "model_sequences": {"sequence": {"5847": {"dna_sequence": {"partial": "0", "sequence": "ATGAAAAAATCCCTGATTGCCCTGACTTTGGCAGCCCTTCCTGTTGCGGCAATGGCCGATGTCACCCTGTACGGTGCCATCAAAGCCGGCGTACAAACTTACCGTTCTGTAGAACATACAGACGGCAAGGTAAGTAAAGTGGAAACCGGCAGCGAAATCGCCGACTTCGGTTCAAAAATCGGCTTCAAAGGCCAAGAAGACCTCGGCAACGGCCTGAAGGCCGTTTGGCAGTTGGAACAAGGTGCCTCCGTCGCCGGCACTAACACCGGCTGGGGCAACAAACAATCCTTCGTCGGCTTGAAGGGCGGCTTCGGTACCATCCGCGCCGGTAGCCTGAACAGCCCCCTGAAAAACACCGGCGCCAACGTCAATGCTTGGGAATCCGGCAAATTTACCGGCAATGTGCTGGAAATCAGCGGAATGGCCCAACGGGAACACCGCTACCTGTCCGTACGCTACGATTCTCCCGAATTTGCCGGCTTCAGCGGCAGCGTACAATACGCACCTAAAGACAATTCAGGCTCAAACGGCGAATCTTACCACGTTGGCTTGAACTACCAAAACAGCGGCTTCTTCGCACAATACGCCGGCTTGTTCCAAAGATACGGCGAAGGCACTAAAAAAATCGAATACGATGATCAAACTTATAGTATCCCCAGTCTGTTTGTTGAAAAACTGCAAGTTCACCGTTTGGTAGGCGGTTACGACAATAATGCCCTGTACGTTTCCGTAGCCGCACAACAACAAGATGCCAAATTGTATGGAGCAATGAGCGGTAATTCGCACAACTCTCAAACCGAAGTTGCCGCTACCGCGGCATACCGTTTCGGCAATGTAACGCCCCGCGTTTCTTACGCCCACGGCTTCAAAGGCACTGTTGATAGTGCAAACCACGACAATACTTATGACCAAGTGGTTGTCGGTGCGGAATACGACTTCTCCAAACGCACTTCTGCCTTGGTTTCTGCCGGCTGGTTGCAAGGAGGCAAAGGCGCAGACAAAATCGTATCGACTGCCAGCGCCGTCGTTCTGCGCCACAAATTCTAA", "fmax": "1117", "accession": "J03017.1", "fmin": "70", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Neisseria gonorrhoeae", "NCBI_taxonomy_id": "485", "NCBI_taxonomy_cvterm_id": "36806"}, "protein_sequence": {"accession": "AAA25500.1", "sequence": "MKKSLIALTLAALPVAAMADVTLYGAIKAGVQTYRSVEHTDGKVSKVETGSEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTNTGWGNKQSFVGLKGGFGTIRAGSLNSPLKNTGANVNAWESGKFTGNVLEISGMAQREHRYLSVRYDSPEFAGFSGSVQYAPKDNSGSNGESYHVGLNYQNSGFFAQYAGLFQRYGEGTKKIEYDDQTYSIPSLFVEKLQVHRLVGGYDNNALYVSVAAQQQDAKLYGAMSGNSHNSQTEVAATAAYRFGNVTPRVSYAHGFKGTVDSANHDNTYDQVVVGAEYDFSKRTSALVSAGWLQGGKGADKIVSTASAVVLRHKF"}}}}, "ARO_category": {"36017": {"category_aro_name": "penam", "category_aro_cvterm_id": "36017", "category_aro_accession": "3000008", "category_aro_class_name": "Drug Class", "category_aro_description": "Penams, often referred to as penicillins, are a group of antibiotics derived from Penicillium fungi. Penicillin antibiotics are historically significant because they are the first drugs that were effective against many previously serious diseases such as syphilis and Staphylococcus infections. Penicillins are still widely used today, though many types of bacteria are now resistant. All penicillins are beta-lactam antibiotics in the penam sub-group, and are used in the treatment of bacterial infections caused by susceptible, usually Gram-positive, organisms."}, "36189": {"category_aro_name": "tetracycline antibiotic", "category_aro_cvterm_id": "36189", "category_aro_accession": "3000050", "category_aro_class_name": "Drug Class", "category_aro_description": "These antibiotics are derived from tetracycline, a polyketide antibiotic that inhibits the 30S subunit of bacterial ribosomes."}, "35951": {"category_aro_name": "cephalosporin", "category_aro_cvterm_id": "35951", "category_aro_accession": "0000032", "category_aro_class_name": "Drug Class", "category_aro_description": "Cephalosporins are a class of beta-lactam antibiotics, containing the beta-lactam ring fused with a dihydrothiazolidine ring. Together with cephamycins they belong to a sub-group called cephems. Cephalosporin are bactericidal, and act by inhibiting the synthesis of the peptidoglycan layer of bacterial cell walls. The peptidoglycan layer is important for cell wall structural integrity, especially in Gram-positive organisms."}, "35962": {"category_aro_name": "cephamycin", "category_aro_cvterm_id": "35962", "category_aro_accession": "0000044", "category_aro_class_name": "Drug Class", "category_aro_description": "Cephamycins are a group of beta-lactam antibiotics, very similar to cephalosporins. Together with cephalosporins, they form a sub-group of antibiotics known as cephems. Cephamycins are bactericidal, and act by inhibiting the synthesis of the peptidoglycan layer of bacterial cell walls. The peptidoglycan layer is important for cell wall structural integrity, especially in Gram-positive organisms. The 7-alpha-methoxy group increases resistance to beta-lactamases."}, "35997": {"category_aro_name": "antibiotic target alteration", "category_aro_cvterm_id": "35997", "category_aro_accession": "0001001", "category_aro_class_name": "Resistance Mechanism", "category_aro_description": "Mutational alteration or enzymatic modification of antibiotic target which results in antibiotic resistance."}, "40661": {"category_aro_name": "Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics", "category_aro_cvterm_id": "40661", "category_aro_accession": "3003938", "category_aro_class_name": "AMR Gene Family", "category_aro_description": "Mutations in PBP transpeptidases that change the affinity for penicillin thereby conferring resistance to penicillin antibiotics"}, "35968": {"category_aro_name": "tetracycline", "category_aro_cvterm_id": "35968", "category_aro_accession": "0000051", "category_aro_class_name": "Antibiotic", "category_aro_description": "Tetracycline is a broad-spectrum polyketide antibiotic produced by many Streptomyces. It works by inhibiting action of the prokaryotic 30S ribosome."}}, "ARO_name": "Neisseria gonorrhoea porB1b gene conferring resistance to beta-lactam", "model_type": "protein variant model", "model_description": "The protein variant model is an AMR detection model. Protein variant models are similar to protein homolog models - they detect the presence of a protein sequence based on its similarity to a curated reference sequence, but secondarily search submitted query sequences for curated sets of mutations shown clinically to confer resistance relative to wild-type. This model includes a protein reference sequence, a curated BLASTP cut-off, and mapped resistance variants. Mapped resistance variants may include any or all of: single resistance variants, insertions, deletions, co-dependent resistance variants, nonsense SNPs, and/or frameshift mutations. Protein variant model matches to reference sequences are categorized on two criteria: strict and loose. A strict match has a BLASTP bitscore above the curated BLASTP cutoff value and contains at least one detected mutation from amongst the mapped resistance variants; a loose match has a BLASTP bitscore below the curated BLASTP cutoff value but still contains at least one detected mutation from amongst the mapped resistance variants. Regardless of BLASTP bitscore, if a sequence does not contain one of the mapped resistance variants, it is not considered a match and not detected by the protein variant model.", "ARO_id": "42964", "model_name": "Neisseria gonorrhoea porB1b gene conferring resistance to beta-lactam", "model_type_id": "40293"}, "3631": {"model_id": "3631", "ARO_accession": "3004835", "model_param": {"blastp_bit_score": {"param_value": "1400", "param_type_id": "40725", "param_type": "BLASTP bit-score", "param_description": "A score is a numerical value that describes the overall quality of an alignment with higher numbers correspond to higher similarity. The bit-score (S) is determined by the following formula: S = (\u03bb \u00d7 S \u2212 lnK)/ ln2 where \u03bb is the Gumble distribution constant, S is the raw alignment score, and K is a constant associated with the scoring matrix. Many AMR detection models use this parameter, including the protein homolog and protein variant models. The BLASTP bit-score parameter is a curated value determined from BLASTP analysis of the canonical reference sequence of a specific AMR-associated protein against the database of CARD reference sequence. This value establishes a threshold for computational prediction of a specific protein amongst a batch of submitted sequences."}, "snp": {"param_type": "single resistance variant", "param_value": {"9247": "E666K"}, "clinical": {"9247": "E666K"}, "param_type_id": "36301", "param_description": "A nucleotide or amino acid substitution that confers elevated resistance to antibiotic(s) relative to wild type. The most common type encoded in the CARD is an amino acid substitution gleaned from the literature with format [wild-type][position][mutation], e.g. R184Q. When present in the associated gene or protein, a single resistance variant confers resistance to an antibiotic drug or drug class. Single resistance variants are used by the protein variant and rRNA mutation models to detect antibiotic resistance from submitted sequences."}}, "ARO_description": "PilQ is an important gonococcal outer membrane component, member of secretin protein family, and involved in Type IV pilus formation.", "model_sequences": {"sequence": {"5848": {"dna_sequence": {"partial": "0", "sequence": "ATGAATACCAAACTGACAAAAATCATTTCCGGTCTCTTTGTCGCAACCGCCGCCTTTCAGACGGCATCGGCAGGAAACATTACAGACATCAAAGTTTCCTCCCTGCCCAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGATTGTCAACCCGACCGGCTTCGTAACCTCCTCACCGGCCCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGGATCAACAGGTACTCGAATATGCCGATCCTCTGTTGAGCAAAATCAGTGCCGCACAAAACAGCAGCCGTGCGCGTCTGGTTCTGAATTTGAACAAACCGGGCCAATACAATACCGAAGTACGCGGGAACAAAGTTTGGATATTCATTAACGAATCGGACGATACCGTGTCCGCCCCCGCCCGCCCAGCCGTAAAAGCCGCGCCTGCCGCACCGGCAAAACAACAGGCTGCCGCACCGTTTACCGAGTCCGTAGTATCCGTATCCGCACCGTTCAGCCCGGCAAAACAACAGGCAGCGGCATCGGCAAAACAACAGGCGGCGACACCGGCAAAACAAACCAATATCGATTTCCGCAAAGACGGCAAAAATGCCGGCATTATCGAATTGGCGGCATTGGGCTTTGCCGGGCAGCCCGACATCAGCCAACAGCACGACCACATCATCGTTACGCTGAAAAACCATACCCTGCCGACCGCGCTCCAACGCAGTTTGGATGTGGCAGACTTCAAAACACCGGTTCAAAAGGTTACGCTGAAACGCCTCAATAACGACACCCAGCTGATTATCACAACAACCGGCAACTGGGAACTCGTCAACAAATCCGCCGCGCCCGGATACTTTACCTTCCAAGTCCTGCCGAAAAAACAAAACCTCGAGTCAGGCGGCGTGAACAATGCGCCCAAAACCTTCACAGGCCGGAAAATCTCCCTTGACTTCCAAGATGTCGAAATCCGCACCATCCTGCAGATTTTGGCAAAAGAATCCGGGATGAACATTGTTGCCAGCGACTCCGTCAACGGCAAAATGACCCTCTCCCTCAAAGATGTGCCTTGGGATCAGGCTTTGGATTTGGTTATGCAGGCGCGCAACCTCGATATGCGCCAGCAAGGGAACATCGTCAACATCGCGCCCCGCGACGAGCTGCTTGCCAAAGACAAAGCCTTCTTACAGGCGGAAAAAGACATTGCCGATCTGGGCGCGCTGTATTCCCAAAACTTCCAATTGAAATACAAAAATGTGGAAGAATTCCGCAGCATCCTGCGTTTGGACAATGCCGACACGACCGGAAACCGCAACACGCTTGTCAGCGGCAGGGGCAGCGTGCTGATCGATCCCGCCACCAACACCCTGATTGTTACCGATACCCGCAGCGTCATCGAAAAATTCCGCAAACTGATTGACGAATTGGACGTACCCGCGCAACAAGTGATGATTGAGGCGCGTATCGTCGAAGCGGCAGACGGCTTCTCGCGCGATTTGGGCGTTAAGTTCGGCGCGACAGGCAGGAAAAAACTGAAAAATGAGACGAGCGCATTCGGCTGGGGCGTGAACTCCGGCTTCGGGGGCGGCGATAAATGGGAGGCCCAAACCAAAATCAACCTGCCGGTTGCCGCTGCCGCAAACAGCATTTCGCTGGTGCGCGCGATTTCCTCCGGCGCGTTGAATTTGGAATTGTCCGCATCCGAGTCGCTTTCAAAAACCAAAACGCTTGCCAATCCGCGCGTGCTGACCCAAAACCGCAAAGAGGCCAAAATCGAATCCGGTTACGAAATTCCTTTTACCGTAACTACAGCCTCGGGCGGCGGCAACTCTACCAACACGGAACTCAAAAAAGCCGTCTTGGGGCTGACCGTTACGCCGAACATCACGCCCGACGGACAAATCATCATGACCGTCAAAATCAACAAAGACTCGCCTGCACAATGTGCTTCAGGCAACAACACAATCCTATGTATTTCGACCAAAAGCCTGAATACGCAGGCTATGGTTGAAAACGGCGGCACTTTGATTGTCGGCGGTATTTATGAAGAAAACAACGGCAATACGCTGACCAAAGTCCCCCTGTTGGGCGACATCCCCGTTATCGGCAACCTCTTTAAAACACGCGGGAAAAAAACCGACCGCCGCGAACTGCTGATTTTCATTACCCCGAGGATTATAGATACGGCCGGCAACAGCCTGCGCTATTGA", "fmax": "1480887", "accession": "LR134358", "fmin": "1478691", "strand": "+"}, "NCBI_taxonomy": {"NCBI_taxonomy_name": "Neisseria gonorrhoeae", "NCBI_taxonomy_id": "485", "NCBI_taxonomy_cvterm_id": "36806"}, "protein_sequence": {"accession": "VEG60537.1", "sequence": "MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQAATPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTALQRSLDVADFKTPVQKVTLKRLNNDTQLIITTTGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGGGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIIDTAGNSLRY"}}}}, "ARO_category": {"36017": {"category_aro_name": "penam", "category_aro_cvterm_id": "36017", "category_aro_accession": "3000008", "category_aro_class_name": "Drug Class", "category_aro_description": "Penams, often referred to as penicillins, are a group of antibiotics derived from Penicillium fungi. Penicillin antibiotics are historically significant because they are the first drugs that were effective against many previously serious diseases such as syphilis and Staphylococcus infections. Penicillins are still widely used today, though many types of bacteria are now resistant. All penicillins are beta-lactam antibiotics in the penam sub-group, and are used in the treatment of bacterial infections caused by susceptible, usually Gram-positive, organisms."}, "35951": {"category_aro_name": "cephalosporin", "category_aro_cvterm_id": "35951", "category_aro_accession": "0000032", "category_aro_class_name": "Drug Class", "category_aro_description": "Cephalosporins are a class of beta-lactam antibiotics, containing the beta-lactam ring fused with a dihydrothiazolidine ring. Together with cephamycins they belong to a sub-group called cephems. Cephalosporin are bactericidal, and act by inhibiting the synthesis of the peptidoglycan layer of bacterial cell walls. The peptidoglycan layer is important for cell wall structural integrity, especially in Gram-positive organisms."}, "40661": {"category_aro_name": "Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics", "category_aro_cvterm_id": "40661", "category_aro_accession": "3003938", "category_aro_class_name": "AMR Gene Family", "category_aro_description": "Mutations in PBP transpeptidases that change the affinity for penicillin thereby conferring resistance to penicillin antibiotics"}, "35997": {"category_aro_name": "antibiotic target alteration", "category_aro_cvterm_id": "35997", "category_aro_accession": "0001001", "category_aro_class_name": "Resistance Mechanism", "category_aro_description": "Mutational alteration or enzymatic modification of antibiotic target which results in antibiotic resistance."}, "35962": {"category_aro_name": "cephamycin", "category_aro_cvterm_id": "35962", "category_aro_accession": "0000044", "category_aro_class_name": "Drug Class", "category_aro_description": "Cephamycins are a group of beta-lactam antibiotics, very similar to cephalosporins. Together with cephalosporins, they form a sub-group of antibiotics known as cephems. Cephamycins are bactericidal, and act by inhibiting the synthesis of the peptidoglycan layer of bacterial cell walls. The peptidoglycan layer is important for cell wall structural integrity, especially in Gram-positive organisms. The 7-alpha-methoxy group increases resistance to beta-lactamases."}, "35979": {"category_aro_name": "ceftriaxone", "category_aro_cvterm_id": "35979", "category_aro_accession": "0000062", "category_aro_class_name": "Antibiotic", "category_aro_description": "Ceftriaxone is a third-generation cephalosporin antibiotic. The presence of an aminothiazolyl sidechain increases ceftriazone's resistance to beta-lactamases. Like other third-generation cephalosporins, it has broad spectrum activity against Gram-positive and Gram-negative bacteria."}}, "ARO_name": "Neisseria gonorrhoea pilQ gene conferring resistance to beta-lactam", "model_type": "protein variant model", "model_description": "The protein variant model is an AMR detection model. Protein variant models are similar to protein homolog models - they detect the presence of a protein sequence based on its similarity to a curated reference sequence, but secondarily search submitted query sequences for curated sets of mutations shown clinically to confer resistance relative to wild-type. This model includes a protein reference sequence, a curated BLASTP cut-off, and mapped resistance variants. Mapped resistance variants may include any or all of: single resistance variants, insertions, deletions, co-dependent resistance variants, nonsense SNPs, and/or frameshift mutations. Protein variant model matches to reference sequences are categorized on two criteria: strict and loose. A strict match has a BLASTP bitscore above the curated BLASTP cutoff value and contains at least one detected mutation from amongst the mapped resistance variants; a loose match has a BLASTP bitscore below the curated BLASTP cutoff value but still contains at least one detected mutation from amongst the mapped resistance variants. Regardless of BLASTP bitscore, if a sequence does not contain one of the mapped resistance variants, it is not considered a match and not detected by the protein variant model.", "ARO_id": "42965", "model_name": "Neisseria gonorrhoea pilQ gene conferring resistance to beta-lactam", "model_type_id": "40293"}}}