Analyze

BLAST

Perform standard BLAST searches against the CARD reference sequences. Results are annotated with extra information from CARD. Sequence data must be in FASTA format.

CARD reference sequences are also available for download for custom analyses.

RGI main

Use the online Resistance Gene Identifier to predict resistome(s) from protein, genome, or genome assembly data based on homology and SNP models. Sequence data must be in FASTA format.

Full documentation and an alternate command line version of RGI are available at https://github.com/arpcard/rgi.

RGI bwt

Use the command line version of the Resistance Gene Identifier to predict resistome(s) from short sequencing reads based on reference sequences in CARD and read mapping algorithms (default: KMA). Sequence data must be in FASTQ format.

Full documentation and the command line version of RGI are available at https://github.com/arpcard/rgi.

Chan Zuckerberg ID (CZ ID) has implemented a web-based platform for RGI analysis of metagenomic sequencing reads: CZ ID AMR Pipeline Workflow.