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Use or reproduction of these materials, in whole or in part, by any commercial organization whether or not for non-commercial (including research) or commercial purposes is prohibited, except with written permission of McMaster University. See the Use or Download Copyright & Disclaimer.

Exception: Ontologies at the Comprehensive Antibiotic Resistance Database are freely available under the Creative Commons CC-BY license version 4.0

Exception: The CARD Bait Capture Platform is freely available under the Creative Commons CC-BY license version 4.0

The Antibiotic Resistance Ontology (ARO), draft Mobilome Ontology (MOBIO), draft Virulence Ontology (VIRO), and Resistance Gene Identifier (RGI) are also available at GitHub. The ARO is registered at the OBO Foundry.

Download Ontology Files (freely available, see README), use https://card.mcmaster.ca/latest/ontology for automated downloads
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Download CARD Data (see README), use https://card.mcmaster.ca/latest/data for automated downloads
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Track CARD Data Changes
JSON TAB
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Download CARD Prevalence, Resistomes, & Variants data (see README), use https://card.mcmaster.ca/latest/variants for automated downloads
NAME ACTION
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Download Software, use https://card.mcmaster.ca/latest/software for automated downloads. A Galaxy wrapper for RGI is available at the Galaxy Tool Shed: https://toolshed.g2.bx.psu.edu/view/card/rgi/. Full documentation, including Conda and Docker instructions, are available at: https://github.com/arpcard/rgi
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Download CARD Bait Capture Platform, use https://card.mcmaster.ca/latest/baits for automated downloads. See https://www.ncbi.nlm.nih.gov/pubmed/31611361
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RGI Conda install

# searches rgi package and show available versions

$ conda search --channel bioconda rgi

# install rgi package

$ conda install --channel bioconda rgi

# install rgi specific version

$ conda install --channel bioconda rgi=3.1.1

# remove rgi package

$ conda remove --channel bioconda rgi