Mycobacterium tuberculosis mas mutations confer resistance to pyrazinamide

Accession ARO:3004978
Synonym(s)Rv2940c
CARD Short NameMtub_mas_PZA
DefinitionMutations in mas that can contribute to or confer resistance to pyrazinamide.
AMR Gene Familypyrazinamide resistant mas
Drug Classpyrazine antibiotic
Resistance Mechanismantibiotic target alteration
Classification9 ontology terms | Show
Parent Term(s)2 ontology terms | Show
+ confers_resistance_to_antibiotic pyrazinamide [Antibiotic]
+ pyrazinamide resistant mas [AMR Gene Family]
Publications

Gopal P, et al. 2016. ACS Infect Dis 2(9):616-626 Pyrazinamide Resistance Is Caused by Two Distinct Mechanisms: Prevention of Coenzyme A Depletion and Loss of Virulence Factor Synthesis. (PMID 27759369)

Ezewudo M, et al. 2018. Sci Rep 8(1):15382 Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase. (PMID 30337678)

Resistomes

Prevalence of Mycobacterium tuberculosis mas mutations confer resistance to pyrazinamide among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 414 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: protein variant model

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGSNCBI GIGRDI-AMR2
No prevalence data


Detection Models

Model Type: protein variant model

Model Definition: Protein Variant Models (PVM) perform a similar search as Protein Homolog Models (PHM), i.e. detect protein sequences based on their similarity to a curated reference sequence, but secondarily screen query sequences for curated sets of mutations to differentiate them from antibiotic susceptible wild-type alleles. PVMs are designed to detect AMR acquired via mutation of house-keeping genes or antibiotic targets, e.g. a mutated gyrase resistant to aminocoumarin antibiotics. PVMs include a protein reference sequence (often from antibiotic susceptible wild-type alleles), a curated bit-score cut-off, and mapped resistance variants. Mapped resistance variants may include any or all of single point mutations, insertions, or deletions curated from the scientific literature. A Strict RGI match has a BLASTP bit-score above the curated BLASTP cutoff value and contains at least one curated mutation from amongst the mapped resistance variants, while a Loose RGI match has a bit-score less than the curated BLASTP bit-score cut-off but still contains at least one curated mutation from amongst the mapped resistance variants.

Bit-score Cut-off (blastP): 4180

PubMed: mutation data hand curated from the scientific literature, evaluated as conferring resistance (R). CRyPTIC: mutation data acquired from the CRyPTIC catalog, evaluated as resistant (R), susceptible (S), or undetermined (U). ReSeqTB: mutation data acquired from the ReSeqTB catalog, evaluated as conferring resistance (Minimal, Moderate, High), not conferring resistance (None), or Indeterminate. WHO: mutation data acquired from the WHO 2023 catalog, evaluated as resistant (R), susceptible (S), or undetermined (U).

MutationMutation typePubMedReSeqTBCRyPTICWHO
L98Msingle resistance variantno dataReSeqTB-Minimalno datano data
S213Csingle resistance variantno dataReSeqTB-Highno datano data
P398Rsingle resistance variantno dataReSeqTB-Highno datano data
P495Rsingle resistance variantno dataReSeqTB-Highno datano data
T2005Psingle resistance variantno dataReSeqTB-Minimalno datano data

>gb|NP_217456.1|-|Mycobacterium tuberculosis mas mutations confer resistance to pyrazinamide [Mycobacterium tuberculosis H37Rv]
MESRVTPVAVIGMGCRLPGGINSPDKLWESLLRGDDLVTEIPPDRWDADDYYDPEPGVPG
RSVSRWGGFLDDVAGFDAEFFGISEREATSIDPQQRLLLETSWEAIEHAGLDPASLAGSS
TAVFTGLTHEDYLVLTTTAGGLASPYVVTGLNNSVASGRIAHTLGLHGPAMTFDTACSSG
LMAVHLACRSLHDGEADLALAGGCAVLLEPHASVAASAQGMLSSTGRCHSFDADADGFVR
SEGCAMVLLKRLPDALRDGNRIFAVVRGTATNQDGRTETLTMPSEDAQVAVYRAALAAAG
VQPETVGVVEAHGTGTPIGDPIEYRSLARVYGAGTPCALGSAKSNMGHSTASAGTVGLIK
AILSLRHGVVPPLLHFNRLPDELSDVETGLFVPQAVTPWPNGNDHTPKRVAVSSFGMSGT
NVHAIVEEAPAEASAPESSPGDAEVGPRLFMLSSTSSDALRQTARQLATWVEEHQDCVAA
SDLAYTLARGRAHRPVRTAVVAANLPELVEGLREVADGDALYDAAVGHGDRGPVWVFSGQ
GSQWAAMGTQLLASEPVFAATIAKLEPVIAAESGFSVTEAITAQQTVTGIDKVQPAVFAV
QVALAATMEQTYGVRPGAVVGHSMGESAAAVVAGALSLEDAARVICRRSKLMTRIAGAGA
MGSVELPAKQVNSELMARGIDDVVVSVVASPQSTVIGGTSDTVRDLIARWEQRDVMAREV
AVDVASHSPQVDPILDDLAAALADIAPMTPKVPYYSATLFDPREQPVCDGAYWVDNLRNT
VQFAAAVQAAMEDGYRVFAELSPHPLLTHAVEQTGRSLDMSVAALAGMRREQPLPHGLRG
LLTELHRAGAALDYSALYPAGRLVDAPLPAWTHARLFIDDDGQEQRAQGACTITVHPLLG
SHVRLTEEPERHVWQGDVGTSVLSWLSDHQVHNVAALPGAAYCEMALAAAAEVFGEAAEV
RDITFEQMLLLDEQTPIDAVASIDAPGVVNFTVETNRDGETTRHATAALRAAEDDCPPPG
YDITALLQAHPHAVNGTAMRESFAERGVTLGAAFGGLTTAHTAEAGAATVLAEVALPASI
RFQQGAYRIHPALLDACFQSVGAGVQAGTATGGLLLPLGVRSLRAYGPTRNARYCYTRLT
KAFNDGTRGGEADLDVLDEHGTVLLAVRGLRMGTGTSERDERDRLVSERLLTLGWQQRAL
PEVGDGEAGSWLLIDTSNAVDTPDMLASTLTDALKSHGPQGTECASLSWSVQDTPPNDQA
GLEKLGSQLRGRDGVVIVYGPRVGDPDEHSLLAGREQVRHLVRITRELAEFEGELPRLFV
VTRQAQIVKPHDSGERANLEQAGLRGLLRVISSEHPMLRTTLIDVDEHTDVERVAQQLLS
GSEEDETAWRNGDWYVARLTPSPLGHEERRTAVLDPDHDGMRVQVRRPGDLQTLEFVASD
RVPPGPGQIEVAVSMSSINFADVLIAFGRFPIIDDREPQLGMDFVGVVTAVGEGVTGHQV
GDRVGGFSEGGCWRTFLTCDANLAVTLPPGLTDEQAITAATAHATAWYGLNDLAQIKAGD
KVLIHSATGGVGQAAISIARAKGAEIFATAGNPAKRAMLRDMGVEHVYDSRSVEFAEQIR
RDTDGYGVDIVLNSLTGAAQRAGLELLAFGGRFVEIGKADVYGNTRLGLFPFRRGLTFYY
LDLALMSVTQPDRVRELLATVFKLTADGVLTAPQCTHYPLAEAADAIRAMSNAEHTGKLV
LDVPRSGRRSVAVTPEQAPLYRRDGSYIITGGLGGLGLFFASKLAAAGCGRIVLTARSQP
NPKARQTIEGLRAAGADIVVECGNIAEPDTADRLVSAATATGLPLRGVLHSAAVVEDATL
TNITDELIDRDWSPKVFGSWNLHRATLGQPLDWFCLFSSGAALLGSPGQGAYAAANSWVD
VFAHWRRAQGLPVSAIAWGAWGEVGRATFLAEGGEIMITPEEGAYAFETLVRHDRAYSGY
IPILGAPWLADLVRRSPWGEMFASTGQRSRGPSKFRMELLSLPQDEWAGRLRRLLVEQAS
VILRRTIDADRSFIEYGLDSLGMLEMRTHVETETGIRLTPKVIATNNTARALAQYLADTL
AEEQAAAPAAS



>gb|NC_000962.3|-|3276380-3282715|Mycobacterium tuberculosis mas mutations confer resistance to pyrazinamide [Mycobacterium tuberculosis H37Rv]
ATGGAATCACGTGTCACTCCCGTTGCGGTGATCGGGATGGGATGTCGGCTTCCTGGGGGGATCAACTCGCCCGACAAACTGTGGGAGTCG
TTGCTGCGCGGTGATGACTTGGTCACCGAGATTCCGCCCGACCGCTGGGACGCCGACGACTATTACGACCCTGAGCCAGGGGTTCCCGGG
CGGTCGGTGTCCCGGTGGGGTGGGTTCCTTGACGACGTCGCCGGTTTCGATGCTGAGTTCTTCGGGATTAGCGAGCGGGAAGCGACCTCG
ATCGATCCGCAGCAGCGGCTACTGCTGGAAACGTCGTGGGAGGCGATCGAGCATGCTGGTCTGGATCCGGCGTCGTTGGCCGGGTCCTCG
ACGGCCGTTTTTACTGGGCTGACCCACGAGGACTACCTGGTACTCACCACAACGGCGGGCGGTTTGGCCAGTCCATATGTGGTTACCGGC
CTCAACAACAGTGTGGCGTCAGGGCGGATCGCGCACACATTGGGTCTACATGGTCCGGCGATGACGTTTGACACCGCGTGTTCTTCGGGT
CTGATGGCGGTGCACCTGGCCTGCCGCAGCCTGCATGACGGCGAAGCTGACCTCGCTTTGGCGGGCGGTTGTGCGGTGCTGCTGGAGCCG
CATGCCAGTGTGGCGGCGTCTGCGCAGGGCATGCTGTCGTCAACCGGTCGGTGCCATTCATTCGATGCTGACGCGGATGGGTTTGTGCGT
TCCGAGGGCTGCGCGATGGTGTTGCTGAAGCGACTGCCGGATGCGCTGCGCGACGGTAATCGGATCTTCGCCGTGGTGCGTGGCACGGCC
ACCAATCAGGACGGCCGCACGGAGACGCTCACCATGCCGTCCGAGGACGCCCAGGTTGCCGTGTACCGTGCGGCGTTGGCGGCGGCGGGC
GTGCAGCCCGAAACGGTCGGTGTGGTCGAGGCGCACGGCACCGGTACGCCAATCGGCGACCCGATTGAGTACCGCAGCCTGGCGCGGGTG
TATGGCGCGGGCACCCCCTGCGCGCTTGGATCGGCCAAGAGCAACATGGGGCACAGCACGGCATCGGCGGGGACCGTCGGGCTGATCAAG
GCAATTCTGTCACTGCGGCACGGGGTGGTGCCGCCGCTGCTGCATTTCAATCGGCTGCCCGATGAGCTTTCCGACGTCGAGACCGGGCTC
TTTGTGCCGCAAGCGGTTACGCCGTGGCCCAACGGTAATGATCACACACCGAAGCGGGTCGCGGTGTCCTCGTTCGGGATGTCCGGGACC
AACGTGCATGCCATCGTGGAAGAGGCCCCAGCAGAAGCTTCCGCACCCGAGAGTTCACCGGGCGACGCTGAGGTGGGCCCGCGGCTATTC
ATGCTGTCGTCCACGTCCAGCGACGCACTGCGCCAGACGGCCCGCCAACTAGCCACCTGGGTGGAAGAACACCAGGACTGCGTGGCGGCC
TCGGATCTGGCCTACACGCTGGCGCGTGGCCGCGCGCACCGGCCGGTGCGCACCGCGGTGGTTGCCGCCAACCTGCCGGAGCTCGTCGAG
GGTTTGCGCGAGGTGGCCGACGGTGACGCCCTCTATGACGCGGCGGTGGGACACGGTGATCGAGGACCGGTCTGGGTCTTCTCCGGGCAA
GGGTCGCAGTGGGCGGCGATGGGCACGCAATTGCTCGCCAGCGAACCAGTGTTCGCGGCCACCATCGCCAAGCTGGAGCCGGTGATCGCC
GCAGAATCGGGATTCTCGGTGACCGAGGCGATAACGGCGCAGCAGACCGTGACCGGAATCGACAAAGTGCAGCCGGCAGTGTTCGCCGTT
CAGGTCGCGTTGGCCGCCACCATGGAGCAAACCTACGGAGTGCGGCCGGGCGCGGTCGTCGGACACTCGATGGGTGAGTCGGCCGCGGCC
GTCGTCGCGGGGGCACTGTCGCTCGAGGACGCGGCGCGCGTCATTTGCCGCCGCTCGAAGCTGATGACCCGCATAGCCGGTGCTGGTGCC
ATGGGCTCGGTGGAATTGCCCGCCAAGCAAGTGAATTCGGAGCTGATGGCACGCGGAATCGACGATGTTGTGGTCTCGGTGGTGGCGTCC
CCGCAATCCACGGTGATCGGCGGTACGAGCGACACCGTTCGTGACCTCATCGCCCGTTGGGAGCAGCGGGACGTGATGGCGCGCGAGGTG
GCCGTCGACGTGGCGTCGCACTCGCCTCAAGTCGATCCGATACTCGACGATTTGGCCGCGGCGCTGGCGGACATTGCTCCGATGACGCCC
AAGGTGCCGTACTACTCGGCGACCCTGTTCGACCCGCGCGAGCAGCCGGTGTGCGATGGCGCTTACTGGGTGGACAATCTGCGCAACACG
GTGCAGTTCGCCGCGGCGGTGCAGGCTGCGATGGAGGACGGCTACCGGGTCTTCGCGGAGCTGTCGCCCCACCCGCTGCTTACCCACGCC
GTCGAACAGACGGGCCGAAGCCTCGACATGTCGGTCGCCGCCCTGGCCGGCATGCGGCGAGAGCAGCCTCTGCCGCATGGTCTGCGCGGC
TTGCTGACGGAGCTGCACCGCGCGGGCGCCGCTTTGGACTATTCGGCGCTGTATCCCGCTGGGCGGCTGGTGGATGCGCCGCTGCCGGCG
TGGACCCACGCCCGCCTATTCATCGACGATGATGGGCAAGAACAGCGGGCACAAGGTGCCTGCACCATCACCGTGCATCCGTTGCTTGGC
TCGCATGTGCGGCTGACTGAGGAACCTGAGCGCCACGTCTGGCAGGGCGACGTTGGCACCTCGGTGCTGTCCTGGCTCAGCGATCATCAG
GTGCATAACGTTGCCGCCCTTCCCGGCGCCGCCTACTGCGAGATGGCTTTGGCTGCGGCCGCTGAGGTCTTCGGCGAAGCGGCTGAGGTT
CGCGACATCACCTTTGAGCAGATGTTGTTGCTCGACGAGCAGACCCCGATCGACGCCGTCGCATCGATCGACGCGCCTGGTGTCGTCAAC
TTCACCGTGGAGACCAACCGGGACGGTGAAACCACCCGGCATGCCACCGCGGCGCTGCGCGCCGCCGAAGATGACTGCCCGCCGCCGGGG
TACGACATCACCGCTCTGCTGCAGGCGCATCCGCACGCCGTGAACGGGACCGCCATGCGGGAATCGTTCGCCGAGCGTGGTGTTACTTTG
GGCGCCGCGTTCGGTGGTCTGACCACCGCGCATACCGCCGAGGCGGGAGCCGCGACGGTGCTGGCCGAGGTCGCGCTGCCCGCGTCGATC
CGGTTCCAGCAGGGCGCCTACCGAATCCACCCGGCGCTGCTGGACGCTTGTTTCCAGTCGGTCGGCGCGGGCGTCCAGGCCGGTACGGCC
ACTGGTGGCCTGCTGTTGCCGTTGGGTGTGCGCAGCCTGCGTGCCTACGGGCCTACCCGCAATGCCCGCTACTGCTACACGCGGTTGACC
AAGGCCTTCAACGACGGGACCCGAGGTGGTGAGGCCGACCTCGACGTGCTGGACGAGCACGGGACCGTCCTGTTGGCCGTGCGTGGGCTA
CGCATGGGAACCGGGACCTCCGAACGCGACGAGCGTGACCGCCTAGTCAGCGAGCGGCTACTGACCCTCGGATGGCAGCAGCGAGCGCTG
CCCGAGGTTGGCGACGGCGAGGCTGGATCGTGGCTATTGATCGACACTTCCAACGCCGTCGACACCCCCGACATGTTGGCTTCCACGTTG
ACGGACGCGCTGAAGTCCCACGGCCCCCAAGGCACCGAATGCGCCAGCCTGTCCTGGTCGGTCCAGGACACCCCGCCCAACGATCAAGCT
GGCCTCGAAAAGCTGGGCAGCCAGCTGCGTGGCCGCGATGGTGTGGTGATCGTGTATGGGCCTCGCGTCGGCGACCCCGATGAGCACAGT
CTGCTGGCCGGTCGTGAACAGGTCCGTCACCTGGTTCGGATCACCCGGGAACTGGCTGAATTCGAGGGCGAGCTGCCGCGCTTGTTCGTG
GTGACCAGACAAGCCCAGATAGTGAAGCCGCACGACTCGGGAGAAAGAGCCAACCTGGAGCAGGCCGGCCTGCGTGGTCTGCTACGGGTG
ATCAGCAGTGAACATCCGATGCTGCGCACCACCTTGATCGATGTGGACGAACACACGGACGTTGAGCGGGTGGCCCAGCAGCTGCTGAGC
GGATCGGAAGAGGACGAGACGGCCTGGCGGAATGGCGACTGGTATGTGGCCCGCTTGACCCCCAGTCCGCTGGGCCATGAAGAGCGGCGC
ACCGCGGTCTTGGATCCCGACCACGACGGTATGCGGGTGCAGGTCCGCAGGCCGGGAGACTTGCAAACGTTGGAATTCGTTGCGAGTGAC
CGAGTTCCGCCCGGCCCCGGGCAAATCGAAGTCGCGGTCAGCATGTCCAGCATCAACTTCGCCGACGTTTTGATCGCGTTTGGACGATTC
CCCATTATCGATGACCGCGAGCCGCAGTTGGGTATGGATTTCGTCGGTGTGGTGACTGCGGTCGGGGAAGGTGTCACCGGTCACCAGGTC
GGTGATCGTGTTGGCGGTTTCTCCGAAGGTGGCTGTTGGCGGACGTTCCTCACCTGTGACGCCAACCTCGCGGTCACGCTGCCGCCCGGC
TTGACCGATGAGCAGGCGATCACGGCGGCCACCGCGCATGCCACCGCCTGGTATGGGCTCAACGACCTGGCTCAGATCAAGGCCGGTGAC
AAAGTGTTGATTCACTCCGCCACCGGCGGTGTGGGGCAGGCGGCCATATCGATTGCCCGCGCCAAGGGAGCGGAGATTTTCGCGACCGCC
GGCAATCCCGCGAAGCGAGCCATGCTGCGCGACATGGGCGTCGAGCATGTCTACGATTCGCGCAGCGTCGAGTTCGCCGAGCAGATCCGG
CGCGACACCGACGGGTACGGCGTGGATATCGTGCTGAACTCGCTGACCGGCGCCGCCCAACGTGCGGGGCTGGAGTTGTTGGCCTTCGGC
GGACGCTTCGTCGAAATCGGCAAGGCCGACGTTTACGGCAACACCCGGCTGGGGCTGTTCCCGTTCCGTCGCGGACTGACCTTCTACTAC
TTGGACCTCGCGCTGATGTCGGTCACCCAGCCCGACCGGGTCCGTGAGTTGCTGGCCACGGTGTTCAAGCTCACCGCAGACGGGGTGCTG
ACCGCACCGCAATGCACTCATTACCCGTTGGCCGAGGCGGCCGACGCCATCCGGGCAATGAGCAACGCCGAGCACACCGGCAAACTCGTG
CTCGACGTACCGCGTAGCGGCCGTAGAAGCGTGGCGGTCACCCCGGAGCAAGCTCCGCTGTACCGCCGCGACGGCTCCTACATCATCACC
GGCGGCCTGGGTGGCCTCGGCCTGTTCTTCGCCTCGAAGCTGGCCGCGGCGGGCTGTGGCCGGATCGTGCTGACCGCACGTTCCCAGCCC
AACCCCAAAGCGCGGCAGACCATCGAAGGCCTGCGCGCGGCTGGGGCCGACATCGTGGTGGAGTGTGGCAACATCGCCGAACCCGACACG
GCGGACCGGCTGGTGAGTGCGGCGACCGCTACCGGGCTTCCGCTGCGCGGTGTGCTGCACTCGGCGGCGGTGGTCGAGGATGCCACGCTG
ACCAACATCACCGATGAGCTCATCGATCGCGACTGGTCGCCCAAGGTGTTCGGATCCTGGAACCTACACCGCGCCACCCTCGGTCAGCCG
CTGGACTGGTTCTGCTTGTTCTCCTCGGGAGCGGCATTGCTCGGCTCGCCGGGTCAGGGCGCCTACGCGGCGGCCAACAGCTGGGTCGAC
GTCTTCGCGCACTGGCGCCGCGCCCAGGGCCTGCCGGTCAGCGCGATTGCGTGGGGTGCGTGGGGCGAGGTCGGCCGCGCCACGTTCTTG
GCCGAGGGGGGCGAAATCATGATCACCCCGGAGGAAGGTGCGTATGCCTTCGAGACGCTCGTGCGCCACGACCGCGCCTACAGCGGTTAC
ATTCCGATCCTCGGGGCGCCATGGCTGGCCGACCTTGTCCGACGCAGCCCGTGGGGTGAAATGTTCGCATCCACTGGGCAGCGGTCAAGG
GGCCCAAGCAAATTCCGCATGGAGCTCCTTTCGCTGCCGCAAGATGAATGGGCCGGCCGGCTACGGCGTCTGCTGGTTGAGCAGGCCAGT
GTGATCCTGCGTCGCACGATCGACGCTGACCGCTCATTCATCGAGTACGGCCTGGATTCGCTGGGCATGCTCGAGATGCGTACCCACGTT
GAAACCGAGACCGGGATACGCCTGACCCCCAAGGTCATCGCCACAAACAACACCGCCCGCGCTTTGGCCCAGTACTTGGCGGACACGCTG
GCCGAGGAGCAGGCGGCGGCACCGGCGGCATCATAG

Curator Acknowledgements
Curator Description Most Recent Edit