| Accession | ARO:3002694 |
| CARD Short Name | cmlA4 |
| Definition | cmlA4 is a plasmid-encoded chloramphenicol exporter that is found in Klebsiella pneumoniae. |
| AMR Gene Family | major facilitator superfamily (MFS) antibiotic efflux pump |
| Drug Class | phenicol antibiotic |
| Resistance Mechanism | antibiotic efflux |
| Efflux Component | efflux pump complex or subunit conferring antibiotic resistance |
| Resistomes with Sequence Variants | Achromobacter xylosoxidanswgs, Aeromonas caviaeg+wgs, Burkholderia cepaciawgs, Corynebacterium diphtheriaewgs, Enterobacter hormaecheiwgs, Escherichia colip+wgs, Klebsiella aerogeneswgs, Klebsiella oxytocawgs, Klebsiella pneumoniaeg+p+wgs+gi, Klebsiella quasipneumoniaewgs, Pseudomonas aeruginosawgs, Salmonella entericawgs, Shigella sonneiwgs |
| Classification | 7 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + antibiotic molecule + antibiotic efflux [Resistance Mechanism] + determinant of antibiotic resistance + efflux pump complex or subunit conferring antibiotic resistance [Efflux Component] + phenicol antibiotic [Drug Class] |
| Parent Term(s) | 3 ontology terms | Show + confers_resistance_to_antibiotic chloramphenicol [Antibiotic] + major facilitator superfamily (MFS) antibiotic efflux pump [AMR Gene Family] + confers_resistance_to_drug_class phenicol antibiotic [Drug Class] |
| Publications | Poirel L, et al. 2000. Antimicrob Agents Chemother 44(3): 622-632. Biochemical sequence analyses of GES-1, a novel class A extended-spectrum beta-lactamase, and the class 1 integron In52 from Klebsiella pneumoniae. (PMID 10681329) |
Prevalence of cmlA4 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Achromobacter xylosoxidans | 0% | 0% | 0.76% | 0% |
| Aeromonas caviae | 2.27% | 0% | 5.91% | 0% |
| Burkholderia cepacia | 0% | 0% | 6.73% | 0% |
| Corynebacterium diphtheriae | 0% | 0% | 0.63% | 0% |
| Enterobacter hormaechei | 0% | 0% | 0.09% | 0% |
| Escherichia coli | 0% | 0.01% | 0.01% | 0% |
| Klebsiella aerogenes | 0% | 0% | 0.56% | 0% |
| Klebsiella oxytoca | 0% | 0% | 0.42% | 0% |
| Klebsiella pneumoniae | 0.59% | 0.02% | 0.22% | 0.95% |
| Klebsiella quasipneumoniae | 0% | 0% | 0.13% | 0% |
| Pseudomonas aeruginosa | 0% | 0% | 0.14% | 0% |
| Salmonella enterica | 0% | 0% | 0.04% | 0% |
| Shigella sonnei | 0% | 0% | 0.07% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 800