Model Type : protein variant model
Model Definition : Protein Variant Models (PVM) perform a similar search as Protein Homolog Models (PHM), i.e. detect protein sequences based on their similarity to a curated reference sequence, but secondarily screen query sequences for curated sets of mutations to differentiate them from antibiotic susceptible wild-type alleles. PVMs are designed to detect AMR acquired via mutation of house-keeping genes or antibiotic targets, e.g. a mutated gyrase resistant to aminocoumarin antibiotics. PVMs include a protein reference sequence (often from antibiotic susceptible wild-type alleles), a curated bit-score cut-off, and mapped resistance variants. Mapped resistance variants may include any or all of single point mutations, insertions, or deletions curated from the scientific literature. A Strict RGI match has a BLASTP bit-score above the curated BLASTP cutoff value and contains at least one curated mutation from amongst the mapped resistance variants, while a Loose RGI match has a bit-score less than the curated BLASTP bit-score cut-off but still contains at least one curated mutation from amongst the mapped resistance variants.
Bit-score Cut-off (blastP) : 4250
Legend:
discovered in clinical, agricultural, or environmental isolates discovered via laboratory selection experiments ReSeqTB https://platform.reseqtb.org Published Variants :
PMID in progress (TB): A957P N1899S
ReSeqTB :
COPY
>gb|CCP45736.1|+|Mycobacterium tuberculosis ppsC mutations confer resistance to pyrazinamide [Mycobacterium tuberculosis H37Rv]
MTAATPDRRAIITEALHKIDDLTARLEIAEKSSSEPIAVIGMGCRFPGGVNNPEQFWDLLCAGRSGIVRVPAQRWDADAYYCDDHTVPGTICSTEGGFLTSWQPDEFDAEFFSISPREAAAMDPQQRLLIEVAWEALEDAGVPQHTIRGTQTSVFVGVTAYDYMLTLAGRLRPVDLDAYIPTGNSANFAAGRLAYILGARGPAVVIDTACSSSLVAVHLACQSLRGRESDMALVGGTNLLLSPGPSIACSRWGMLSPEGRCKTFDASADGYVRGEGAAVVVLKRLDDAVRDGNRILAVVRGSAVNQDGASSGVTVPNGPAQQALLAKALTSSKLTAADIDYVEAHGTGTPLGDPIELDSLSKVFSDRAGSDQLVIGSVKTNLGHLEAAAGVAGLMKAVLAVHNGYIPRHLNFHQLTPHASEAASRLRIAADGIDWPTTGRPRRAGVSSFGVSGTNAHVVIEQAPDPMAAAGTEPQRGPVPAVSTLVVFGKTAPRVAATASVLADWLDGPGAAVPLADVAHTLNHHRARQTRFGTVAAVDRRQAVIGLRALAAGQSAPGVVAPREGSIGGGTVFVYSGRGSQWAGMGRQLLADEPAFAAAIAELEPEFVAQGGFSLRDVIAGGKELVGIEQIQLGLIGMQLALTALWRSYGVTPDAVIGHSMGEVAAAVVAGALTPAQGLRVTAVRSRLMAPLSGQGTMALLELDAEATEALIADYPEVSLGIYASPRQTVISGPPLLIDELIDKVRQQNGFATRVNIEVAPHNPAMDALQPAMRSELADLTPQPPTIPIISTTYADLGISLGSGPRFDAEHWATNMRNPVRFHQAIAHAGADHHTFIEISAHPLLTHSISDTLRASYDVDNYLSIGTLQRDAHDTLEFHTNLNTTHTTHPPQTPHPPEPHPVLPTTPWQHTQHWITATSAAYHRPDTHPLLGVGVTDPTNGTRVWESELDPDLLWLADHVIDDLVVLPGAAYAEIALAAATDTFAVEQDQPWMISELDLRQMLHVTPGTVLVTTLTGDEQRCQVEIRTRSGSSGWTTHATATVARAEPLAPLDHEGQRREVTTADLEDQLDPDDLYQRLRGAGQQHGPAFQGIVGLAVTQAGVARAQVRLPASARTGSREFMLHPVMMDIALQTLGATRTATDLAGGQDARQGPSSNSALVVPVRFAGVHVYGDITRGVRAVGSLAAAGDRLVGEVVLTDANGQPLLVVDEVEMAVLGSGSGATELTNRLFMLEWEPAPLEKTAEATGALLLIGDPAAGDPLLPALQSSLRDRITDLELASAADEATLRAAISRTSWDGIVVVCPPRANDESMPDEAQLELARTRTLLVASVVETVTRMGARKSPRLWIVTRGAAQFDAGESVTLAQTGLRGIARVLTFEHSELNTTLVDIEPDGTGSLAALAEELLAGSEADEVALRDGQRYVNRLVPAPTTTSGDLAAEARHQVVNLDSSGASRAAVRLQIDQPGRLDALNVHEVKRGRPQGDQVEVRVVAAGLNFSDVLKAMGVYPGLDGAAPVIGGECVGYVTAIGDEVDGVEVGQRVIAFGPGTFGTHLGTIADLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLPVTAFSLHDAADAFRLMASGKHTGKIVISIPQHGSIEAIAAPPPLPLVSRDGGYLIVGGMGGLGFVVARWLAEQGAGLIVLNGRSAPSDEVAAAIAELNASGSRIEVITGDITEPDTAERLVRAVEDAGFRLAGVVHSAMVLADEIVLNMTDSAARRVFAPKVTGSWRLHVATAARDVDWWLTFSSAAALLGTPGQGAYAAANSWVDGLVAHRRSAGLPAVGINWGPWADVGRAQFFKDLGVEMINAEQGLAAMQAVLTADRGRTGVFSLDARQWFQSFPAVAGSSLFAKLHDSAARKSGQRRGGGAIRAQLDALDAAERPGHLASAIADEIRAVLRSGDPIDHHRPLETLGLDSLMGLELRNRLEASLGITLPVALVWAYPTISDLATALCERMDYATPAAAQEISDTEPELSDEEMDLLADLVDASELEAATRGES
>gb|CCP45736.1|+|Mycobacterium tuberculosis ppsC mutations confer resistance to pyrazinamide [Mycobacterium tuberculosis H37Rv] MTAATPDRRAIITEALHKIDDLTARLEIAEKSSSEPIAVIGMGCRFPGGVNNPEQFWDLLA DHVN MTDSAARRVFAPKVTGSWRLH COPY
>gb|AL123456.3|+|3255685-3262251|Mycobacterium tuberculosis ppsC mutations confer resistance to pyrazinamide [Mycobacterium tuberculosis H37Rv]
>gb|AL123456.3|+|3255685-3262251|Mycobacterium tuberculosis ppsC mutations confer resistance to pyrazinamide [Mycobacterium tuberculosis H37Rv]
ATGACCGCAGCGACACCAGATCGCCGAGCGATCATCACCGAGGCGCTGCACAAGATCGATGATCTCACGGCGCGCCTGGAAATCGCCGAAAAATCCAGCAGCGAACCGATCGCGGTGATCGGCATGGGTTGCCGGTTCCCGGGCGGGGTCAACAACCCCGAACAGTTCTGGGATTTGTTGTGCGCCGGCCGAAGCGGCATCGTCCGGGTTCCCGCGCAGCGGTGGGACGCCGACGCCTACTACTGTGATGATCACACCGTGCCGGGGACCATCTGCAGCACCGAAGGCGGTTTTCTCACCAGCTGGCAGCCAGATGAGTTCGATGCGGAGTTCTTCTCAATCTCCCCGCGCGAAGCGGCGGCGATGGACCCGCAGCAGCGATTGTTGATTGAAGTTGCGTGGGAAGCGCTAGAAGACGCGGGCGTCCCGCAACACACCATTCGCGGTACGCAAACCTCGGTATTCGTCGGTGTCACCGCCTACGACTACATGCTCACGCTGGCGGGCCGGCTACGACCTGTTGACCTCGACGCGTACATCCCAACCGGGAACTCGGCGAACTTCGCCGCCGGACGGCTGGCCTACATCCTCGGGGCACGCGGACCCGCGGTGGTCATCGACACGGCCTGCTCATCGTCGTTGGTGGCGGTGCACCTGGCATGCCAGAGCCTGCGCGGGCGGGAAAGCGATATGGCGTTGGTGGGTGGAACCAACCTTTTGCTGAGCCCGGGACCCAGCATCGCTTGCTCGCGATGGGGGATGCTGTCACCGGAGGGGCGGTGCAAGACCTTCGATGCGTCCGCCGATGGATACGTGCGCGGCGAGGGTGCCGCGGTGGTGGTGCTCAAGCGGCTGGATGACGCGGTGCGCGACGGCAACCGCATTCTTGCCGTGGTACGCGGTTCGGCGGTCAACCAGGACGGTGCCAGCAGCGGAGTGACCGTTCCCAACGGGCCAGCGCAACAGGCGTTGCTCGCCAAAGCATTGACGTCGTCGAAGTTGACAGCGGCCGATATCGACTACGTCGAGGCCCATGGAACTGGTACTCCGCTGGGCGACCCGATCGAACTCGATTCACTGAGTAAGGTTTTCAGCGATCGAGCGGGTTCGGATCAGTTGGTGATTGGATCGGTGAAGACCAATCTCGGTCACCTGGAAGCGGCGGCCGGTGTCGCCGGGCTGATGAAAGCCGTGCTCGCGGTACACAACGGCTACATTCCGCGGCATCTTAACTTCCACCAGCTGACACCACATGCAAGTGAGGCCGCATCTCGGCTGAGGATCGCCGCCGATGGTATTGACTGGCCAACCACCGGTCGACCTCGCCGGGCGGGGGTGTCGTCGTTCGGCGTCAGTGGGACGAATGCACACGTGGTGATCGAGCAGGCACCCGATCCGATGGCCGCTGCGGGAACGGAGCCGCAGCGCGGCCCCGTTCCCGCGGTGTCGACGCTGGTGGTGTTCGGCAAGACCGCACCGCGGGTGGCTGCGACGGCATCGGTGCTGGCAGATTGGCTGGACGGCCCCGGCGCGGCGGTGCCGCTGGCCGATGTCGCGCACACCCTCAACCATCACCGGGCCCGTCAGACCAGGTTCGGCACGGTAGCCGCTGTCGATCGGCGCCAAGCGGTGATCGGGTTACGCGCGCTGGCCGCGGGTCAATCCGCCCCCGGGGTGGTGGCACCCCGCGAAGGCTCCATCGGAGGCGGCACGGTGTTCGTCTACTCGGGACGAGGATCGCAGTGGGCCGGAATGGGGCGCCAACTGCTGGCCGACGAGCCGGCATTCGCCGCTGCCATCGCCGAACTGGAGCCGGAATTCGTTGCTCAAGGCGGGTTTTCGCTGCGCGACGTGATCGCCGGCGGAAAAGAGTTGGTTGGCATCGAACAGATCCAGCTGGGACTGATCGGGATGCAGCTGGCGCTGACCGCGTTGTGGCGCTCATACGGCGTGACACCCGATGCGGTGATAGGTCACTCGATGGGCGAAGTGGCCGCCGCGGTGGTGGCCGGGGCGCTGACCCCGGCCCAGGGATTACGGGTGACCGCGGTCCGGTCGAGGCTGATGGCGCCGCTGTCCGGGCAGGGCACGATGGCGTTGCTGGAACTCGACGCCGAAGCCACTGAGGCGCTGATTGCCGACTACCCCGAGGTGAGCCTGGGGATCTATGCCTCCCCACGCCAAACCGTGATTTCCGGGCCGCCGCTATTGATCGACGAGCTCATCGACAAGGTGCGCCAACAGAACGGCTTCGCTACCCGAGTCAACATCGAGGTGGCCCCCCACAACCCGGCCATGGATGCACTGCAACCGGCGATGCGTTCGGAATTGGCCGATCTCACCCCGCAACCGCCGACCATCCCGATCATCTCCACCACCTACGCCGACCTCGGCATTTCCCTGGGTTCCGGCCCCAGGTTCGACGCCGAGCACTGGGCAACCAACATGCGCAACCCGGTACGGTTCCACCAGGCCATCGCTCATGCCGGCGCCGATCACCACACCTTCATCGAGATCAGCGCCCACCCGCTGCTGACCCACTCGATCAGCGACACCCTGCGCGCCAGCTACGATGTCGACAACTATCTGAGCATCGGCACCTTGCAACGCGACGCTCACGACACCCTCGAGTTCCACACGAACCTCAACACGACCCACACCACCCATCCCCCCCAGACTCCCCACCCCCCCGAACCCCACCCCGTGCTGCCCACCACCCCATGGCAGCACACCCAGCACTGGATCACCGCCACGTCGGCCGCTTACCACAGGCCCGACACCCACCCGTTGCTTGGCGTCGGTGTCACCGACCCCACTAACGGCACCCGGGTTTGGGAAAGCGAGCTCGACCCTGATCTGCTGTGGCTCGCCGATCACGTCATCGACGATCTCGTTGTGCTGCCCGGGGCGGCCTACGCTGAGATCGCGCTGGCGGCCGCGACCGACACCTTCGCAGTCGAGCAAGATCAGCCCTGGATGATCAGCGAGCTCGACCTTCGGCAGATGCTGCATGTGACCCCAGGCACCGTGTTGGTCACCACGCTCACCGGCGACGAGCAGCGATGCCAGGTCGAAATACGCACCCGCAGCGGGTCTTCGGGATGGACCACCCACGCCACCGCCACCGTTGCCCGCGCCGAGCCGTTAGCACCGCTGGATCACGAAGGACAGCGGCGCGAGGTAACCACTGCCGACCTCGAGGACCAACTGGATCCCGACGACCTGTATCAGCGCCTGCGCGGCGCCGGCCAACAGCACGGACCCGCGTTTCAAGGCATCGTGGGGCTGGCCGTCACGCAAGCTGGCGTGGCCCGTGCGCAAGTACGGCTACCCGCATCGGCCAGAACGGGTTCCCGTGAGTTCATGCTGCACCCGGTGATGATGGATATCGCGTTGCAGACACTGGGAGCCACCCGGACGGCGACCGATCTGGCCGGCGGCCAGGACGCCCGGCAGGGCCCATCTTCCAACTCGGCCTTGGTGGTACCGGTGCGTTTCGCCGGTGTCCACGTGTACGGCGATATCACCCGCGGGGTTCGCGCGGTCGGCTCTCTGGCCGCAGCCGGTGACCGGCTGGTCGGCGAGGTAGTCCTGACCGACGCGAATGGCCAACCGCTGCTGGTCGTCGATGAAGTCGAGATGGCGGTGCTCGGATCCGGCAGTGGCGCAACGGAACTCACCAACCGCCTATTCATGTTGGAGTGGGAGCCCGCACCGCTGGAAAAGACCGCCGAGGCTACGGGTGCCCTGTTGCTGATCGGTGACCCCGCCGCGGGTGACCCGCTGCTGCCCGCGCTGCAGTCGTCGCTGCGCGACCGCATCACCGACCTCGAGCTGGCATCCGCGGCCGACGAAGCCACGCTGCGCGCGGCGATCAGCCGAACCTCCTGGGACGGGATCGTTGTGGTCTGTCCGCCCCGAGCGAACGACGAATCGATGCCGGACGAGGCTCAACTGGAGTTGGCACGCACACGCACGCTGCTGGTCGCCAGCGTGGTCGAGACCGTGACGCGAATGGGTGCCCGCAAGAGCCCCCGACTGTGGATCGTCACCCGTGGCGCTGCACAGTTCGACGCAGGCGAGTCGGTCACGTTGGCGCAGACCGGCCTACGTGGCATCGCACGGGTGCTGACATTTGAGCATTCGGAGTTGAATACCACCCTCGTAGATATCGAACCGGACGGCACCGGCTCGCTGGCCGCCCTGGCCGAGGAGTTGCTTGCCGGTTCCGAGGCCGACGAGGTCGCCTTGCGCGACGGTCAACGCTATGTCAACCGGCTGGTGCCCGCACCCACCACGACCAGTGGTGATCTCGCCGCCGAAGCTCGCCACCAGGTGGTGAACCTGGACAGCTCGGGCGCTTCCAGGGCAGCTGTCCGACTGCAGATCGATCAACCCGGACGGCTGGACGCACTAAACGTTCACGAGGTGAAACGGGGCAGACCGCAAGGCGATCAAGTCGAGGTTCGCGTCGTCGCCGCCGGACTCAACTTCAGCGACGTGCTCAAAGCGATGGGCGTGTATCCGGGACTCGACGGTGCCGCGCCGGTGATCGGCGGCGAATGTGTCGGCTACGTGACGGCCATCGGTGACGAGGTTGACGGCGTCGAGGTCGGACAGCGAGTTATCGCATTCGGCCCTGGCACATTCGGGACCCATCTGGGGACCATCGCCGATCTCGTCGTCCCAATTCCGGACACGCTAGCCGACAACGAGGCGGCCACGTTCGGCGTCGCCTATCTCACCGCCTGGCACTCGCTGTGCGAGGTCGGGCGCCTATCCCCCGGCGAACGCGTGCTCATCCATTCCGCCACCGGCGGTGTTGGAATGGCGGCGGTCTCGATCGCGAAGATGATCGGCGCCCGCATCTACACGACGGCCGGTTCGGACGCCAAACGGGAAATGCTTTCCAGGCTCGGTGTCGAGTACGTCGGCGACTCGCGAAGCGTGGATTTCGCTGACGAGATCCTCGAGCTGACAGACGGCTACGGTGTGGACGTCGTTCTCAATTCGCTGGCGGGCGAGGCGATTCAACGCGGCGTGCAGATCCTTGCGCCCGGTGGCCGGTTCATCGAACTGGGCAAGAAGGACGTCTACGCCGATGCCAGCTTGGGCTTGGCCGCGCTAGCCAAGAGCGCGTCCTTCTCCGTGGTCGACCTCGACCTGAATCTCAAGCTGCAGCCGGCGCGCTACCGCCAACTCCTGCAACACATCCTGCAGCACGTGGCGGATGGCAAACTCGAGGTACTTCCCGTCACCGCATTTAGCCTGCACGATGCGGCCGACGCATTCCGGCTTATGGCATCCGGTAAACACACCGGCAAGATCGTCATCTCGATACCCCAGCACGGCAGCATCGAGGCGATCGCTGCCCCGCCACCACTTCCTCTGGTCAGCCGCGACGGCGGCTACCTCATCGTCGGCGGTATGGGTGGTCTCGGATTCGTCGTCGCGCGCTGGCTGGCTGAGCAAGGTGCGGGACTGATTGTCCTCAACGGACGCTCGGCCCCCAGCGACGAGGTGGCAGCCGCTATCGCGGAGCTGAACGCCTCCGGTAGCCGGATCGAGGTGATCACCGGCGACATCACCGAGCCAGACACCGCCGAGCGGCTGGTGCGGGCGGTCGAAGACGCCGGGTTCCGGCTGGCCGGGGTGGTGCACAGCGCGATGGTTCTCGCCGACGAGATCGTGTTGAACATGACCGATTCCGCCGCTCGGCGAGTGTTCGCCCCGAAGGTCACCGGCAGCTGGCGGCTTCATGTGGCCACCGCCGCGCGCGACGTCGACTGGTGGCTGACCTTCTCCTCGGCCGCCGCGCTGCTGGGCACTCCCGGGCAGGGCGCGTACGCCGCCGCCAACTCGTGGGTCGACGGCCTGGTCGCGCATCGGCGCTCGGCCGGACTTCCCGCTGTCGGGATCAACTGGGGCCCGTGGGCCGACGTTGGACGCGCGCAGTTCTTCAAAGACCTCGGGGTGGAGATGATCAACGCCGAGCAGGGGCTTGCCGCCATGCAGGCGGTACTCACCGCCGATCGCGGGCGCACCGGTGTGTTCAGCCTCGACGCGCGGCAGTGGTTCCAATCGTTCCCCGCTGTGGCGGGGTCCTCGCTGTTCGCGAAGCTGCATGACTCGGCGGCCCGCAAAAGTGGGCAGCGGCGCGGCGGGGGCGCGATTCGCGCTCAGCTAGACGCCCTCGACGCGGCCGAACGCCCAGGCCACCTCGCGTCCGCGATCGCCGACGAGATCCGTGCGGTGCTGCGCTCAGGCGATCCCATCGATCACCACCGACCGCTGGAAACCCTGGGACTCGACTCGCTGATGGGCCTGGAATTGCGCAATCGGCTGGAAGCAAGTCTGGGCATCACGTTGCCGGTCGCGTTGGTGTGGGCATACCCGACGATCAGCGATCTCGCGACCGCCCTGTGCGAACGAATGGACTACGCGACACCCGCGGCTGCGCAGGAGATTTCCGATACAGAACCCGAACTGTCCGACGAGGAGATGGATTTGCTCGCCGATCTGGTTGACGCCAGCGAGCTGGAAGCTGCGACGCGAGGCGAGTCATGA
