| Accession | ARO:3005043 |
| Synonym(s) | FloR2 |
| CARD Short Name | cmlA9 |
| Definition | cmlA9 is a Major Facilitator Superfamily efflux gene that is found in Salmonella enterica. |
| AMR Gene Family | major facilitator superfamily (MFS) antibiotic efflux pump |
| Drug Class | phenicol antibiotic |
| Resistance Mechanism | antibiotic efflux |
| Efflux Component | efflux pump complex or subunit conferring antibiotic resistance |
| Resistomes with Perfect Matches | Acinetobacter baumanniig, Bordetella bronchisepticawgs, Burkholderia cenocepaciawgs, Burkholderia vietnamiensiswgs, Enterobacter cloacaewgs, Enterobacter hormaecheig+p+wgs, Escherichia colip+wgs, Klebsiella pneumoniaep+wgs, Laribacter hongkongensiswgs, Proteus mirabilisg+p+wgs, Providencia stuartiiwgs, Pseudomonas aeruginosap+wgs, Pseudomonas monteiliiwgs, Pseudomonas putidawgs, Salmonella entericawgs, Stenotrophomonas maltophiliawgs, Vibrio choleraeg+wgs |
| Resistomes with Sequence Variants | Acinetobacter baumanniig, Bordetella bronchisepticawgs, Burkholderia cenocepaciawgs, Burkholderia vietnamiensiswgs, Enterobacter cloacaewgs, Enterobacter hormaecheig+p+wgs, Escherichia colip+wgs, Klebsiella pneumoniaep+wgs, Laribacter hongkongensiswgs, Proteus mirabilisg+p+wgs, Providencia stuartiiwgs, Pseudomonas aeruginosap+wgs, Pseudomonas monteiliiwgs, Pseudomonas putidawgs, Salmonella entericawgs, Stenotrophomonas maltophiliawgs, Vibrio choleraeg+wgs |
| Classification | 7 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + determinant of antibiotic resistance + antibiotic molecule + antibiotic efflux [Resistance Mechanism] + phenicol antibiotic [Drug Class] + efflux pump complex or subunit conferring antibiotic resistance [Efflux Component] |
| Parent Term(s) | 2 ontology terms | Show + major facilitator superfamily (MFS) antibiotic efflux pump [AMR Gene Family] + confers_resistance_to_antibiotic chloramphenicol [Antibiotic] |
| Publications | Hamidian M, et al. 2015. J. Antimicrob. Chemother. 70(2):617-9 The complete sequence of Salmonella genomic island SGI2. (PMID 25315365) |
Prevalence of cmlA9 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Acinetobacter baumannii | 0.18% | 0% | 0% | 0% |
| Bordetella bronchiseptica | 0% | 0% | 2.74% | 0% |
| Burkholderia cenocepacia | 0% | 0% | 3.29% | 0% |
| Burkholderia vietnamiensis | 0% | 0% | 0.86% | 0% |
| Enterobacter cloacae | 0% | 0% | 0.32% | 0% |
| Enterobacter hormaechei | 0.36% | 0.06% | 0.22% | 0% |
| Escherichia coli | 0% | 0.02% | 0.02% | 0% |
| Klebsiella pneumoniae | 0% | 0.28% | 0.51% | 0% |
| Laribacter hongkongensis | 0% | 0% | 2.08% | 0% |
| Proteus mirabilis | 2.75% | 2.5% | 0.66% | 0% |
| Providencia stuartii | 0% | 0% | 2.27% | 0% |
| Pseudomonas aeruginosa | 0% | 1.17% | 2.52% | 0% |
| Pseudomonas monteilii | 0% | 0% | 7.14% | 0% |
| Pseudomonas putida | 0% | 0% | 2.14% | 0% |
| Salmonella enterica | 0% | 0% | 0.05% | 0% |
| Stenotrophomonas maltophilia | 0% | 0% | 0.45% | 0% |
| Vibrio cholerae | 0.45% | 0% | 1.09% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 750