SGM-7

Accession ARO:3006993
CARD Short NameSGM-7
DefinitionSGM-7 is a SGM beta-lactamase.
AMR Gene FamilySGM beta-lactamase
Drug Classcarbapenem
Resistance Mechanismantibiotic inactivation
Resistomes with Perfect MatchesSphingobium yanoikuyaeg+wgs
Resistomes with Sequence VariantsSphingobium yanoikuyaeg+wgs
Classification12 ontology terms | Show
Parent Term(s)1 ontology terms | Show
+ SGM beta-lactamase [AMR Gene Family]
Resistomes

Prevalence of SGM-7 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: protein homolog model (view sequences)

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGSNCBI GI
Sphingobium yanoikuyae28.57%0%17.65%0%
Show Perfect Only


Detection Models

Model Type: protein homolog model

Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.

Bit-score Cut-off (blastP): 600


>gb|WP_010337133.1|+|SGM-7 [Bacteria, Viruses, Fungi, and other genome sequence associated with antimicrobial resistance]
MALRKSLSLAALTACLVVALPLSAAPKKKAPAKKVEEVPTLPTLLPPAPRYLVPQSALTSVRNPKEIEEETGGRMGIALVDREGALILGF
NRDDRFAMCSTFKAPLAAAVLIGAQGGKFGLEGEIPFTKDDILDYAPVVKKNKKRGRMSMAELAAAAVEVSDNSAANLLLPMLGGPEGLT
SFIRAHGDKITRLDRIEPDLNENIAGDPRDTTSPAAMAGLMGRLLFRDMAAADADRLRGWLNASTTGDKRIKAGLPEGWTSGSKTGSCGT
AYNDVALVKSPAGEEYILAIYLDRPTVDDKKAEAAIAEAAHSALEFVSKAQKSGLN


>gb|NG_050614.1|+|101-1081|SGM-7 [Bacteria, Viruses, Fungi, and other genome sequence associated with antimicrobial resistance]
ATGGCGCTGCGCAAATCCCTCTCGCTCGCGGCGCTGACGGCCTGTCTGGTCGTGGCCTTGCCGTTGTCGGCCGCGCCCAAGAAGAAGGCG
CCGGCCAAGAAGGTGGAAGAGGTGCCGACCCTGCCGACATTGTTGCCGCCGGCACCACGCTATCTGGTGCCGCAATCCGCGCTCACCTCC
GTCCGCAATCCCAAGGAGATCGAGGAGGAGACCGGCGGGCGCATGGGCATCGCGCTGGTCGATCGCGAGGGTGCGCTGATCCTGGGTTTC
AACCGCGATGATCGCTTTGCCATGTGCTCGACCTTCAAGGCGCCGCTGGCCGCCGCCGTGCTGATCGGCGCGCAGGGCGGCAAGTTCGGG
CTGGAGGGGGAGATCCCCTTCACCAAGGACGATATTCTCGATTACGCGCCGGTCGTGAAGAAGAACAAGAAGCGTGGCCGCATGTCGATG
GCCGAACTGGCCGCGGCGGCCGTGGAGGTCAGCGACAACAGTGCCGCCAACCTGTTGCTGCCGATGCTGGGCGGGCCGGAGGGGCTGACC
TCCTTCATCCGCGCCCATGGCGACAAGATCACGCGGCTCGATCGCATCGAGCCGGACCTCAACGAGAATATTGCGGGCGATCCGCGCGAC
ACGACCAGCCCGGCGGCGATGGCCGGGCTGATGGGGCGGCTGTTGTTCCGCGACATGGCAGCGGCCGATGCCGACAGGCTGCGCGGCTGG
CTGAATGCCAGCACCACCGGCGACAAAAGGATCAAGGCTGGTCTGCCCGAAGGCTGGACCTCGGGCAGCAAGACCGGCAGCTGCGGTACC
GCCTATAATGACGTCGCGCTGGTGAAGTCGCCGGCGGGCGAGGAATATATATTGGCCATCTATCTCGACCGGCCGACCGTGGACGACAAG
AAGGCCGAGGCGGCGATCGCCGAAGCCGCCCATTCGGCGCTGGAGTTCGTCAGCAAGGCGCAGAAGAGCGGGCTGAACTAG