IMI-2

Accession ARO:3001859
CARD Short NameIMI-2
DefinitionIMI-2 is a beta-lactamase found in Enterobacteriaceae.
AMR Gene FamilyIMI beta-lactamase
Drug Classcarbapenem
Resistance Mechanismantibiotic inactivation
Resistomes with Perfect MatchesEnterobacter asburiaewgs
Resistomes with Sequence VariantsEnterobacter asburiaewgs
Classification12 ontology terms | Show
Parent Term(s)1 ontology terms | Show
+ IMI beta-lactamase [AMR Gene Family]
Publications

Chu YW, et al. 2011. Emerg Infect Dis 17(1): 130-132. Carbapenemases in enterobacteria, Hong Kong, China, 2009. (PMID 21192875)

Aubron C, et al. 2005. Emerg Infect Dis 11(2): 260-264. Carbapenemase-producing Enterobacteriaceae, U.S. rivers. (PMID 15752444)

Resistomes

Prevalence of IMI-2 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: protein homolog model (view sequences)

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGSNCBI GI
Enterobacter asburiae0%0%0.4%0%
Show Perfect Only


Detection Models

Model Type: protein homolog model

Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.

Bit-score Cut-off (blastP): 550


>gb|ABA00479.1|+|IMI-2 [Enterobacter asburiae]
MSLNVKPSRIAILFSSCLVSISFFSQANTKGIDEIKNLETDFNGRIGVYALDTGSGKSFSYKANERFPLCSSFKGFLAAAVLKGSQDNQL
NLNQIVNYNTRSLEFYSPITTKYKDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDKDFRLDRWELDLNTAIPGDER
DTSTPAAVAKSLKTLALGNILNEREKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTTKNE
KEAKHEDKVIAEASRIAIDNLK


>gb|DQ173429.1|+|1-879|IMI-2 [Enterobacter asburiae]
ATGTCACTTAATGTAAAACCAAGTAGAATAGCCATCTTGTTTAGCTCTTGTTTAGTTTCAATATCATTTTTCTCACAGGCCAATACAAAG
GGAATCGATGAGATTAAAAACCTTGAAACAGATTTCAATGGTAGAATTGGTGTCTACGCTTTAGACACTGGCTCAGGTAAATCATTTTCG
TACAAAGCAAATGAACGATTTCCATTATGTAGTTCTTTCAAAGGTTTTTTAGCTGCTGCTGTATTAAAAGGCTCTCAAGATAATCAACTA
AATCTTAATCAGATCGTGAATTATAATACAAGAAGTTTAGAGTTCTATTCACCCATCACAACTAAATATAAAGATAATGGAATGTCATTA
GGTGATATGGCTGCTGCCGCTTTACAATATAGCGACAATGGTGCTACTAATATTATTCTTGAACGATATATCGGTGGTCCTGAGGGTATG
ACTAAATTCATGCGGTCGATTGGAGATAAAGATTTTAGACTCGATCGTTGGGAGTTAGATCTAAACACAGCAATTCCTGGCGATGAACGT
GACACATCTACACCTGCAGCAGTAGCTAAGAGCCTGAAAACCCTTGCTCTGGGTAACATACTTAATGAGCGTGAAAAGGAAACCTATCAG
ACATGGTTAAAGGGTAACACAACCGGTGCAGCGCGTATTCGTGCTAGCGTACCAAGCGATTGGGTAGTTGGCGATAAAACTGGTAGTTGC
GGAGCATACGGTACGGCAAATGATTATGCGGTAGTCTGGCCAAAGAACCGAGCTCCTCTTATAATTTCTGTATACACTACAAAAAACGAA
AAAGAAGCCAAGCATGAGGATAAAGTAATCGCAGAAGCTTCAAGAATCGCAATTGATAACCTTAAATAA