| Accession | ARO:3002631 |
| CARD Short Name | spd |
| Definition | spd is a plasmid-encoded aminoglycoside nucleotidyltransferase gene in S. aureus. |
| AMR Gene Family | ANT(9) |
| Drug Class | aminoglycoside antibiotic |
| Resistance Mechanism | antibiotic inactivation |
| Resistomes with Perfect Matches | Staphylococcus arlettaewgs, Staphylococcus aureusp+wgs, Staphylococcus haemolyticuswgs, Staphylococcus saprophyticuswgs |
| Resistomes with Sequence Variants | Staphylococcus arlettaewgs, Staphylococcus aureusp+wgs, Staphylococcus equorumwgs, Staphylococcus haemolyticuswgs, Staphylococcus saprophyticuswgs |
| Classification | 11 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + determinant of antibiotic resistance + antibiotic inactivation [Resistance Mechanism] + antibiotic inactivation enzyme + aminoglycoside modifying enzyme + nucleotidylation of antibiotic conferring resistance + antibiotic molecule + aminoglycoside nucleotidyltransferase (ANT) + aminoglycoside antibiotic [Drug Class] + ANT(9) [AMR Gene Family] |
| Parent Term(s) | 2 ontology terms | Show |
| Publications | Jamrozy DM, et al. 2014. J Antimicrob Chemother 69(5): 1193-1196. Identification of a novel plasmid-associated spectinomycin adenyltransferase gene spd in methicillin-resistant Staphylococcus aureus ST398 isolated from animal and human sources. (PMID 24402501) |
Prevalence of spd among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Staphylococcus arlettae | 0% | 0% | 5% | 0% |
| Staphylococcus aureus | 0% | 0.07% | 0.13% | 0% |
| Staphylococcus equorum | 0% | 0% | 7.14% | 0% |
| Staphylococcus haemolyticus | 0% | 0% | 0.22% | 0% |
| Staphylococcus saprophyticus | 0% | 0% | 0.7% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 450