ceoB

Accession ARO:3003010
DefinitionceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump
AMR Gene Familyresistance-nodulation-cell division (RND) antibiotic efflux pump
Drug Classaminoglycoside antibiotic, fluoroquinolone antibiotic
Resistance Mechanismantibiotic efflux
Efflux Componentefflux pump complex or subunit conferring antibiotic resistance
Classification9 ontology terms | Show
Parent Term(s)2 ontology terms | Show
Publications

Guglierame P, et al. 2006. BMC Microbiol 6: 66. Efflux pump genes of the resistance-nodulation-division family in Burkholderia cenocepacia genome. (PMID 16857052)

Resistomes

Prevalence of ceoB among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI for 82 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: protein homolog model (view sequences)

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGS
Burkholderia cenocepacia0%0%4.73%
Burkholderia cepacia0%0%0%
Burkholderia pseudomallei0%0%0.07%
Show Perfect Only


Detection Models

Model Type: protein homolog model

Model Definition: The protein homolog model is an AMR detection model. Protein homolog models detect a protein sequence based on its similarity to a curated reference sequence. A protein homolog model has only one parameter: a curated BLASTP bitscore cutoff for determining the strength of a match. Protein homolog model matches to reference sequences are categorized on three criteria: perfect, strict and loose. A perfect match is 100% identical to the reference sequence along its entire length; a strict match is not identical but the bitscore of the matched sequence is greater than the curated BLASTP bitscore cutoff. Loose matches are other sequences with a match bitscore less than the curated BLASTP bitscore.

Bit-score Cut-off (blastP): 2030


>gb|AAB58161.1|+|ceoB [Burkholderia cepacia]
MNISKFFIDRPIFAGVLSVIILLGGVIAMFLLPISEYPEVVPPSVIVKAQYPGANPKVIAETVASPLEEQINGVENMLYMQSQANSDGNM
TITVTFKLGTDPDKATQLVQNRVNQALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVGQVQLW
GSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQLSVNARGRLQTEDEFGDIVVKTTPDGGVTHLRDIAR
IQLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIV
FLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIENGMNARQATYKAMQEVSGPIIAIALT
LVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFRGFNKVFHRGAENYGRGVR
GVLSRKTLMLGVYLVLVGATVLVSKVVPGGFVPAQDKEYLIAFAQLPNGASLDRTEKVIRDMGSIALKQPGVESAVAFPGLSVNGFTNSS
SAGIVFVTLKPFAERHGKALSAGAIAGALNQKYGAMKDSFVAVFPPPPVLGLGTLGGFKMQIEDRGAVGYAKLSDATNDFIKRAQQAPEL
GPLFTSYQINVPQLNVDLDRVKAKQLGVPVTDVFNTMQVYLGSLYVNDFNRFGRVYQVRVQADAPFRQRADDILQLKTRNDKGEMVPLSS
LVTVTPTFGPEMVVRYNGYTAADINGGPAPGFSSGQAQAAVERIADETLPRGVRFEWTDLTYQQILAGDSAMWVFPISVLLVFLVLAALY
ESLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARELEHDGRTPLEAAIEASRLRLRPILMTSIAFI
MGVVPLVTSTGAGSEMRHAMGVAVFFGMLGVTLFGLI


>gb|U97042|+|1264-4347|ceoB [Burkholderia cepacia]
ATGAACATTTCCAAATTCTTTATCGACCGGCCGATCTTTGCAGGAGTCCTATCGGTGATCATCCTGCTCGGCGGGGTGATCGCGATGTTC
CTGCTGCCGATTTCGGAATATCCGGAAGTCGTGCCGCCTTCGGTGATCGTGAAGGCGCAGTACCCGGGCGCGAACCCGAAAGTGATCGCC
GAGACGGTCGCGTCGCCACTTGAAGAGCAGATCAACGGCGTCGAGAACATGCTCTACATGCAGTCGCAGGCGAACAGCGACGGCAACATG
ACGATCACCGTCACGTTCAAGCTGGGCACCGATCCGGACAAGGCCACGCAGCTCGTGCAGAACCGCGTGAACCAGGCGCTGCCGCGCTTG
CCGGAAGACGTGCAGCGGCTCGGCATCACCACGGTGAAGAGCTCGCCGACGCTGACGATGGTGGTCCACCTGATCTCGCCGGACAACCGC
TACGACATGACCTACCTGCGCAACTACGCGCTGATCAACGTGAAGGATCGCCTGTCGCGGATCCAGGGCGTCGGCCAGGTGCAGCTGTGG
GGTTCGGGCGACTACGCGATGCGCGTGTGGCTCGATCCGCAGAAGGTCGCGCAGCGCGGGCTGTCGGCCGAGGACGTCGTGCAGGCGATC
CGCGAGCAGAACGTGCAGGTCGCGGCCGGCGTGATCGGCGCATCGCCGTCGCTGCCCGGCACGCCGCTGCAGCTGTCGGTGAACGCGCGC
GGCCGTCTGCAGACGGAAGACGAATTCGGCGACATCGTCGTGAAGACGACGCCGGATGGCGGCGTCACGCACCTGCGCGACATCGCGCGG
ATCCAGCTCGACGCGTCCGAGTACGGGCTGCGCTCGCTGCTCGACAACAAGCCGGCCGTCGCGATGGCGATCAACCAGTCGCCGGGCGCG
AACTCGCTGCAGATCTCGGACGAAGTGCGCAAGACGATGGCCGAACTGAAGCAGGACATGCCGGCGGGCGTCGACTACAAGATCGTCTAT
GACCCGACGCAGTTCGTGCGCTCGTCGATCAAGGCCGTCGTGCACACGCTGCTCGAAGCGATCGCGCTGGTCGTGATCGTCGTGATCGTG
TTCCTGCAGACCTGGCGCGCGTCGCTGATTCCGCTGATCGCGGTGCCGGTGTCGATCATCGGCACGTTCTCGCTGCTGCTCGCGTTCGGG
TATTCGATCAACGCGTTGTCGCTGTTCGGGATGGTGCTCGCGATCGGGATCGTGGTCGACGATGCGATCGTCGTCGTCGAGAACGTCGAG
CGCAACATCGAGAACGGGATGAACGCGCGGCAGGCGACCTACAAGGCGATGCAGGAAGTGAGCGGGCCGATCATCGCGATCGCGCTGACG
CTGGTCGCCGTGTTCGTGCCGCTCGCGTTCATGTCGGGCCTGACCGGCCAGTTCTACAAGCAGTTCGCGATGACCATCGCGATCTCGACG
GTGATCTCGGCGTTCAACTCGCTGACGCTGTCGCCGGCGCTGTCCGCGATCCTGCTGAAGGGGCACGGCGACAAGGAAGACTGGCTCACG
CGTGTGATGAACCGCGTGCTCGGCGGCTTCTTCCGCGGCTTCAACAAGGTGTTCCATCGCGGGGCGGAGAACTACGGCCGCGGCGTGCGC
GGCGTGCTGTCGCGCAAGACGCTGATGCTCGGCGTGTATCTCGTGCTGGTGGGCGCGACGGTGCTCGTGTCGAAGGTCGTGCCGGGCGGC
TTCGTGCCCGCGCAGGACAAGGAATACCTGATCGCGTTCGCGCAGCTGCCGAACGGTGCGTCGCTCGACCGCACCGAGAAGGTGATCCGC
GACATGGGTTCGATCGCGCTGAAGCAGCCGGGCGTCGAGAGCGCGGTCGCGTTCCCGGGGCTGTCGGTGAACGGCTTCACCAACAGCTCG
AGCGCGGGCATCGTGTTCGTCACGCTCAAGCCGTTCGCGGAACGGCACGGCAAGGCGCTGTCGGCCGGCGCCATCGCGGGTGCGCTGAAC
CAGAAGTACGGCGCGATGAAGGATTCGTTCGTCGCGGTGTTCCCGCCGCCGCCGGTGCTCGGCCTCGGTACGCTCGGCGGGTTCAAGATG
CAGATCGAGGATCGCGGCGCGGTCGGCTACGCGAAGCTGTCGGATGCGACCAACGACTTCATCAAGCGCGCGCAGCAGGCGCCTGAACTC
GGCCCGCTGTTCACGAGCTACCAGATCAACGTGCCGCAGCTCAACGTCGATCTCGACCGCGTGAAGGCGAAGCAGCTCGGCGTGCCGGTG
ACCGACGTGTTCAACACGATGCAGGTGTATCTGGGTTCGCTGTACGTGAACGACTTCAACCGCTTCGGACGCGTGTACCAGGTGCGCGTG
CAGGCCGATGCGCCGTTCCGCCAGCGCGCGGACGACATCCTGCAACTGAAGACGCGCAACGACAAGGGCGAGATGGTGCCGCTGTCGTCG
CTGGTCACCGTGACGCCGACGTTCGGCCCGGAAATGGTCGTGCGCTACAACGGCTACACGGCGGCCGACATCAACGGCGGCCCGGCGCCC
GGCTTCTCGTCGGGGCAGGCGCAGGCCGCGGTCGAGCGCATCGCCGACGAGACGCTGCCGCGCGGCGTGCGCTTCGAGTGGACCGACCTC
ACGTACCAGCAGATCCTCGCGGGCGATTCGGCGATGTGGGTGTTCCCGATCAGCGTGCTGCTCGTGTTCCTCGTGCTCGCCGCGCTGTAT
GAAAGCCTGACGCTGCCGCTCGCGGTGATCCTGATCGTGCCGATGAGCATTCTGTCGGCGCTGACGGGCGTGTGGCTCACGCAGGGCGAC
AACAACATCTTCACGCAGATCGGCCTGATGGTGCTGGTGGGGCTGTCGGCGAAGAACGCGATCCTGATCGTCGAATTCGCGCGCGAGCTC
GAACACGACGGCAGGACGCCGCTCGAGGCCGCGATCGAGGCGAGCCGGCTGCGGCTGCGCCCGATCCTGATGACGTCGATCGCTTTCATC
ATGGGCGTGGTGCCGCTCGTCACGTCGACCGGCGCGGGTTCGGAAATGCGTCATGCGATGGGGGTCGCGGTGTTCTTCGGGATGCTCGGC
GTGACGCTGTTCGGGCTGATCTGA