TLA-1

Accession ARO:3003202
CARD Short NameTLA-1
DefinitionTLA-1 is a beta-lactamase found in plasmids of clinical isolates of Escherichia coli strain R170 in Latin America. It preferentially hydrolyzed cephaloridine, cefotaxime, cephalothin, benzylpenicillin, and ceftazidime. The enzyme was markedly inhibited by sulbactam, tazobactam, and clavulanic acid.
AMR Gene FamilyTLA beta-lactamase
Drug Classcephalosporin, monobactam
Resistance Mechanismantibiotic inactivation
Classification13 ontology terms | Show
Parent Term(s)1 ontology terms | Show
+ TLA beta-lactamase [AMR Gene Family]
Publications

Alcantar-Curiel D, et al. 2004. Clin Infect Dis 38(8): 1067-1074. Nosocomial bacteremia and urinary tract infections caused by extended-spectrum beta -lactamase-producing Klebsiella pneumoniae with plasmids carrying both SHV-5 and TLA-1 genes. (PMID 15095209)

Resistomes

Prevalence of TLA-1 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 414 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: protein homolog model

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGSNCBI GIGRDI-AMR2
No prevalence data


Detection Models

Model Type: protein homolog model

Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.

Bit-score Cut-off (blastP): 600


>gb|AAD37403.1|+|TLA-1 [Escherichia coli]
MTVPISIIFWGNIMKKHLVVIAFCVLFASASAFAAKGTDSLKSSIEKYLKDKKAKVGVAVLGIEDNFKLNVNEKHHYPMQSTYKFHLALA
VLDKLDKENISIDKKLFVKKSELLPNTWSPLRDKYPDGNVDLSISEILKATVSRSDNNGCDILFRFVGGTNKVHNFISKLGVKNISIKAT
EEEMHKAWNVQYTNWTTPDATVQLLKKFYKNEILSKNSYDYLLNTMIETTTGPKRLKGLLPDGTVVAHKTGSSDTNDKGITAATNDIGII
TLPNGKHFAIAVYVSDSSEKSDVNEKIIAEICKSVWDYLVKDGK


>gb|AF148067.1|+|214-1158|TLA-1 [Escherichia coli]
ATGACAGTTCCTATCAGTATTATTTTTTGGGGGAATATAATGAAAAAACATCTTGTTGTAATTGCATTTTGTGTGCTTTTTGCTTCTGCT
TCTGCTTTTGCGGCTAAAGGTACGGATTCGCTTAAAAGCAGTATTGAAAAATATCTTAAAGATAAAAAAGCTAAAGTGGGTGTTGCCGTT
TTGGGAATTGAAGATAATTTTAAATTGAACGTTAACGAAAAGCATCACTATCCTATGCAGAGCACTTATAAGTTCCATCTTGCATTGGCT
GTGCTCGATAAACTTGATAAGGAGAATATTTCCATTGACAAGAAGCTTTTTGTAAAAAAATCGGAGCTTCTGCCGAATACTTGGAGTCCG
CTAAGAGATAAATATCCCGATGGAAATGTGGATTTATCCATAAGCGAAATTCTGAAAGCTACCGTTTCGCGTAGCGATAATAACGGTTGT
GATATTCTCTTCAGATTTGTTGGTGGAACAAATAAAGTCCACAATTTTATTAGCAAGCTTGGCGTTAAGAATATTTCTATCAAAGCTACA
GAAGAAGAAATGCACAAGGCATGGAATGTACAATATACCAATTGGACAACTCCCGACGCTACCGTTCAGCTCTTAAAGAAGTTCTACAAA
AATGAAATACTCTCAAAAAATAGTTACGACTATTTGCTTAATACTATGATTGAAACTACTACCGGACCGAAACGACTCAAAGGACTTTTG
CCCGATGGAACTGTTGTTGCTCATAAAACCGGAAGCTCCGATACTAACGATAAAGGCATTACTGCTGCCACAAATGATATCGGTATTATT
ACTCTGCCGAACGGTAAACACTTTGCCATTGCTGTTTATGTGTCGGATTCAAGCGAAAAGAGCGATGTTAACGAAAAGATTATTGCCGAA
ATTTGCAAAAGCGTTTGGGATTATCTAGTTAAGGATGGGAAATAG

Curator Acknowledgements
Curator Description Most Recent Edit