Borreliella burgdorferi 16S rRNA mutation conferring resistance to kanamycin

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Accession ARO:3003503
CARD Short NameBbur_16S_KAN
DefinitionPoint mutations in the 3' minor domain of the 16S rRNA gene of Borreliella burgdorferi can confer resistance to kanamycin.
AMR Gene Family16s rRNA with mutation conferring resistance to aminoglycoside antibiotics
Drug Classaminoglycoside antibiotic
Resistance Mechanismantibiotic target alteration
Classification10 ontology terms | Show
Parent Term(s)2 ontology terms | Show
+ confers_resistance_to_antibiotic kanamycin A [Antibiotic]
+ 16s rRNA with mutation conferring resistance to aminoglycoside antibiotics [AMR Gene Family]
Publications

Criswell D, et al. 2006. Antimicrob Agents Chemother 50(2): 445-452. Mutations conferring aminoglycoside and spectinomycin resistance in Borrelia burgdorferi. (PMID 16436695)
Resistomes

Prevalence of Borreliella burgdorferi 16S rRNA mutation conferring resistance to kanamycin among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 414 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: rRNA gene variant model

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGSNCBI GIGRDI-AMR2
No prevalence data


Detection Models

Model Type: rRNA gene variant model

Model Definition: Ribosomal RNA (rRNA) Gene Variant Models (RVM) are similar to Protein Variant Models (PVM), i.e. detect sequences based on their similarity to a curated reference sequence and secondarily screen query sequences for curated sets of mutations to differentiate them from antibiotic susceptible wild-type alleles, except RVMs are designed to detect AMR acquired via mutation of genes encoding ribosomal RNAs (rRNA). RVMs include a rRNA reference sequence (often from antibiotic susceptible wild-type alleles), a curated bit-score cut-off, and mapped resistance variants. Mapped resistance variants may include any or all of single point mutations, insertions, or deletions curated from the scientific literature. A Strict RGI match has a BLASTN bit-score above the curated BLASTN cutoff value and contains at least one curated mutation from amongst the mapped resistance variants, while a Loose RGI match has a bit-score less than the curated BLASTN bit-score cut-off but still contains at least one curated mutation from amongst the mapped resistance variants.

Bit-score Cut-off (blastN): 2500

PubMed: mutation data hand curated from the scientific literature, evaluated as conferring resistance (R). CRyPTIC: mutation data acquired from the CRyPTIC catalog, evaluated as resistant (R), susceptible (S), or undetermined (U). ReSeqTB: mutation data acquired from the ReSeqTB catalog, evaluated as conferring resistance (Minimal, Moderate, High), not conferring resistance (None), or Indeterminate. WHO: mutation data acquired from the WHO 2023 catalog, evaluated as resistant (R), susceptible (S), or undetermined (U).

MutationMutation typePubMed
a1402gsingle resistance variantPMID:16436695


>gb|NZ_ABCW02000003.1|+|1-1536|Borreliella burgdorferi 16S rRNA mutation conferring resistance to kanamycin [Borreliella burgdorferi Bol26]
TTACAAAAGGTAGAATAGTATACAGGGAGAAATAAAATTAAACCCTTTTAAAAAATTTTCAAGTGTTGTAAATATTTATTTTTTAGATCA
AATCATCTTTCAAGGACACAACAAAATTCTTGTGAATCCAGCCTTGAAGTCCATAACTTGTTTCAATAAGAACAAAATCATCTTTGCTGT
CAAGAATATAAACACTTGCATTTCCTTTTAAAAATCTCCAACTCCTTGAAAAATTGTCAGGAACTTTATAAAGAGAGACTAAATCACCCT
TAATTATTCCTACTTCAGATTGTTGCTCATAATAAAAATAATATGTTTCAAATATAGTAAAACAAACCGCAGAAAAAAGTAAAAATATAA
TTATTTTTTTCAAATTTTTTGCCAAAAATCTATAAGAAATAGATACAACTAAAAAATTAATCAAAAATAAACTGATAATAAAAAAAATAT
TAGAAAAAATAAAACTATTGTTACGAACATTGTCTGTAACTCCATTTTTAGCTTCAATCAAATCAATAACTTTATAAGAGGTTTCATTAT
TCGGAGAAGCCAAAAATGCCTTATAAGCTGAATAAATAGCATCAAAATCTCTATCCATTTTACTTAAAACAAGGGCTCTATTTAACCAAA
GTCCTGAATAATTTGGATATTTTTTAAGAATGTTATCTATCTTGATAAGTGCAGTATCATAATTTTTAGTATTATAGTTTTCAATCAAAT
CATTTACATTTTTCTCCGACAATAAACCATCATTTACAGCATTTAAACTAATGCCAACAGCCAATATTAAAATAACCAGCCCAAAACTTG
ATGCTGCAAAAAATTTTTTATAGTTAATTAAAATAATTAAAGATAATAAAAATCCTGGAATCAAAAGTAAATAATAGTATGAAACAAAAA
ATAAAAAAGTTTTATTTTTATAATTCAAAATATCGGCATAAGATAATAGTTTAAAATCATAATCTACATTATTTTGTGCTCTATTTATGC
TGTTAAACTCTCCTGAATATTCGTACTTCAATTTTTTCCCTTTAAGGGTATAAACTGTATCATTATCAGGATTTAAATAATTAAAATCAC
CAATATTTAAAAATACACTACCTTTAGTGTCGGGCTTAACTGTATAAATTTGAGAAATACTACCCTTATATCCATTTTTAGAAGGCTTAA
AGCTATAATTTTTCTTTTTATTAAGAATTTTAGAATTATAAGTTTCAATCTCTGGAAAGTAAAAATGTGGAAAATTCCCTTGACCTGTAA
TTTTTATTAAAATAGTAAATATATCTTGCTCAATTGTCGAATAAGTTGGAGTCTCATAATCAACTCTAAAAGTTCCTACTGCTAAAGATT
TAACCTCTCCAGGAATCGGTTTAACTTTTAATAAAAGCTCAGGGGTATTCCTAACAAGGCCAGAACCAATATTAAAAGAAAAACTGGGAA
TCAAAACATTTTTTGAGCCCTTAAGAGGAGTTAGCACAAAGTTATAAAAAGGTACATCTAAAATCTCTTTATTATGAAAAGTTCTATATT
TAATAT

Curator Acknowledgements
Curator Description Most Recent Edit