| Accession | ARO:3003553 |
| CARD Short Name | CepS |
| Definition | CEPS is a typical class C cephalosporinase found in Aeromonas sobria, first isolated from strain 163a. |
| AMR Gene Family | CepS beta-lactamase |
| Drug Class | cephalosporin |
| Resistance Mechanism | antibiotic inactivation |
| Resistomes with Perfect Matches | Aeromonas hydrophilag+wgs |
| Resistomes with Sequence Variants | Aeromonas hydrophilag+wgs |
| Classification | 13 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + antibiotic inactivation [Resistance Mechanism] + determinant of antibiotic resistance + antibiotic molecule + beta-lactam antibiotic + hydrolysis of antibiotic conferring resistance + antibiotic inactivation enzyme + cephem + beta-lactamase + hydrolysis of beta-lactam antibiotic by serine beta-lactamase + cephalosporin [Drug Class] + class C beta-lactamase |
| Parent Term(s) | 1 ontology terms | Show + CepS beta-lactamase [AMR Gene Family] |
| Publications | Avison MB, et al. 2000. J Antimicrob Chemother 46(5): 695-702. Aeromonas hydrophila AmpH and CepH beta-lactamases: derepressed expression in mutants of Escherichia coli lacking creB. (PMID 11062187) |
Prevalence of CepS among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Aeromonas hydrophila | 33.85% | 0% | 30.65% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 725