IND-9

Accession ARO:3002265
CARD Short NameIND-9
DefinitionIND-9 is a beta-lactamase found in Escherichia coli.
AMR Gene FamilyIND beta-lactamase
Drug Classcarbapenem
Resistance Mechanismantibiotic inactivation
Classification13 ontology terms | Show
Parent Term(s)1 ontology terms | Show
+ IND beta-lactamase [AMR Gene Family]
Publications

Levy SB, et al. 1985. J Antimicrob Chemother 16(1): 7-16. Multiple antibiotic resistance plasmids in Enterobacteriaceae isolated from diarrhoeal specimens of hospitalized children in Indonesia. (PMID 3876328)

Resistomes

Prevalence of IND-9 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: protein homolog model

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGSNCBI GI
No prevalence data


Detection Models

Model Type: protein homolog model

Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.

Bit-score Cut-off (blastP): 400


>gb|ACZ65153.1|+|IND-9 [Chryseobacterium indologenes]
MKKSIQFFIVSLLLSPFANAQVKDFVIEPPISKNLYIYKTFGVFGGKEYSANAVYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVV
AVFATHSHDDRAGDLSFFNKKGIKTYATAKTNELLKKEGKAVSSNIINTGKAYHIGGEEFVVDFIGEGHTVDNVVVWFPKYKVLDGGCLV
KSTSATDLGYIKEANVEQWPQTMNTLKSKYSQATLIIPGHDEWKGGGHVEHTLELLNKK


>gb|GU186045.1|+|35-754|IND-9 [Chryseobacterium indologenes]
ATGAAAAAAAGCATACAGTTTTTTATTGTTTCCCTATTATTAAGTCCGTTTGCTAATGCTCAGGTAAAGGATTTTGTAATAGAACCTCCT
ATCAGCAAGAACTTATATATTTATAAAACTTTTGGTGTATTCGGAGGAAAAGAATATTCTGCCAACGCTGTTTACCTTGTCACAAAAAAA
GGAGTAGTCCTGTTTGATGTTCCCTGGGAAAAAGTTCAGTACCAAAGCTTGATGGATACCATAAAAAAACGTCATAATTTACCTGTAGTG
GCAGTATTTGCTACCCATTCTCATGATGACAGAGCCGGAGATTTAAGCTTCTTCAACAAAAAAGGGATTAAGACCTATGCCACGGCAAAA
ACCAATGAGTTATTGAAAAAAGAAGGTAAAGCGGTGTCCAGCAATATTATAAATACAGGGAAAGCTTATCATATAGGCGGAGAAGAATTT
GTGGTTGATTTTATTGGAGAAGGACATACCGTAGATAATGTAGTGGTATGGTTTCCAAAATATAAAGTTCTTGATGGCGGCTGCTTAGTA
AAAAGTACTTCTGCAACAGATTTAGGATATATCAAGGAAGCAAACGTTGAACAATGGCCACAAACTATGAATACTTTAAAATCCAAATAC
TCTCAGGCAACCTTAATCATTCCGGGACATGACGAATGGAAAGGCGGCGGACATGTAGAACATACATTAGAGCTTTTGAATAAAAAATAA