| Accession | ARO:3002839 |
| Synonym(s) | linF |
| CARD Short Name | lnuF |
| Definition | lnuF is an integron-mediated nucleotidyltransferase found in Escherichia coli. |
| AMR Gene Family | lincosamide nucleotidyltransferase (LNU) |
| Drug Class | lincosamide antibiotic |
| Resistance Mechanism | antibiotic inactivation |
| Resistomes with Sequence Variants | Acinetobacter indicusp, Escherichia coliwgs, Morganella morganiig+wgs+gi, Proteus mirabilisg+p+wgs+gi, Proteus vulgarisg+wgs, Providencia rettgerig+p+wgs+gi, Providencia stuartiig+gi |
| Classification | 8 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + determinant of antibiotic resistance + antibiotic molecule + antibiotic inactivation [Resistance Mechanism] + antibiotic inactivation enzyme + nucleotidylation of antibiotic conferring resistance + lincosamide antibiotic [Drug Class] |
| Parent Term(s) | 3 ontology terms | Show + confers_resistance_to_antibiotic lincomycin [Antibiotic] + confers_resistance_to_antibiotic clindamycin [Antibiotic] + lincosamide nucleotidyltransferase (LNU) [AMR Gene Family] |
| Publications | Heir E, et al. 2004. Ann. Clin. Microbiol. Antimicrob. 3:12 Prevalence and characterization of integrons in blood culture Enterobacteriaceae and gastrointestinal Escherichia coli in Norway and reporting of a novel class 1 integron-located lincosamide resistance gene. (PMID 15242512) |
Prevalence of lnuF among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Acinetobacter indicus | 0% | 3.77% | 0% | 0% |
| Escherichia coli | 0% | 0% | 0.03% | 0% |
| Morganella morganii | 5.77% | 0% | 1.84% | 7.69% |
| Proteus mirabilis | 11.93% | 2.5% | 2.81% | 3.7% |
| Proteus vulgaris | 9.09% | 0% | 11.11% | 0% |
| Providencia rettgeri | 8.82% | 5.41% | 1.27% | 50% |
| Providencia stuartii | 6.25% | 0% | 0% | 33.33% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 550