| Accession | ARO:3007043 |
| Synonym(s) | msrI |
| CARD Short Name | msr(I) |
| Definition | msr(I) is part of the msr subfamily of ABC-F ribosomal protection proteins. |
| AMR Gene Family | msr-type ABC-F protein |
| Drug Class | phosphonic acid antibiotic, streptogramin antibiotic, macrolide antibiotic |
| Resistance Mechanism | antibiotic target protection |
| Resistomes with Perfect Matches | Streptococcus pyogenesg |
| Resistomes with Sequence Variants | Bacillus anthracisp, Bacillus cereuswgs, Lactococcus garvieaewgs, Streptococcus agalactiaewgs, Streptococcus pyogenesg, Streptococcus uberiswgs |
| Classification | 10 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + determinant of antibiotic resistance + antibiotic target protection [Resistance Mechanism] + antibiotic target protection protein + antibiotic molecule + phosphonic acid antibiotic [Drug Class] + ABC-F ATP-binding cassette ribosomal protection protein + streptogramin antibiotic [Drug Class] + macrolide antibiotic [Drug Class] |
| Parent Term(s) | 2 ontology terms | Show + confers_resistance_to_antibiotic fosfomycin [Antibiotic] + msr-type ABC-F protein [AMR Gene Family] |
Prevalence of msr(I) among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 414 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI | GRDI-AMR2 |
|---|---|---|---|---|---|
| Bacillus anthracis | 0% | 0.35% | 0% | 0% | 0% |
| Bacillus cereus | 0% | 0% | 0.3% | 0% | 0% |
| Lactococcus garvieae | 0% | 0% | 2.22% | 0% | 0% |
| Streptococcus agalactiae | 0% | 0% | 0.06% | 0% | 0% |
| Streptococcus pyogenes | 0.37% | 0% | 0% | 0% | 0% |
| Streptococcus uberis | 0% | 0% | 3.57% | 0% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 600
| Curator | Description | Most Recent Edit |
|---|