| Accession | ARO:3001769 |
| CARD Short Name | OXA-42 |
| Definition | OXA-42 is a beta-lactamase found in Burkholderia pseudomallei. |
| AMR Gene Family | OXA beta-lactamase, OXA-42-like beta-lactamase |
| Drug Class | penicillin beta-lactam |
| Resistance Mechanism | antibiotic inactivation |
| Resistomes with Sequence Variants | Burkholderia pseudomalleig+wgs, Burkholderia thailandensisg+wgs |
| Classification | 15 ontology terms | Show + process or component of antibiotic biology or chemistry + antibiotic molecule + mechanism of antibiotic resistance + beta-lactam antibiotic + determinant of antibiotic resistance + antibiotic inactivation [Resistance Mechanism] + antibiotic inactivation enzyme + hydrolysis of antibiotic conferring resistance + penicillin beta-lactam [Drug Class] + beta-lactamase resistant penicillin + hydrolysis of beta-lactam antibiotic by serine beta-lactamase + beta-lactamase + class D beta-lactamase + oxacillin [Antibiotic] + OXA beta-lactamase [AMR Gene Family] |
| Parent Term(s) | 1 ontology terms | Show + OXA-42-like beta-lactamase [AMR Gene Family] |
| Publications | Niumsup P and Wuthiekanun V. 2002. J Antimicrob Chemother 50(4): 445-455. Cloning of the class D beta-lactamase gene from Burkholderia pseudomallei and studies on its expression in ceftazidime-susceptible and -resistant strains. (PMID 12356787) |
Prevalence of OXA-42 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 414 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI | GRDI-AMR2 |
|---|---|---|---|---|---|
| Burkholderia pseudomallei | 0.69% | 0% | 0.3% | 0% | 0% |
| Burkholderia thailandensis | 45.65% | 0% | 96.23% | 0% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 500
| Curator | Description | Most Recent Edit |
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