| Accession | ARO:3002959 |
| Synonym(s) | vanY-G vanYG vanYG1 |
| CARD Short Name | vanY_in_vanG_cl |
| Definition | Also known as vanYG, is a vanY variant found in the vanG gene cluster. |
| AMR Gene Family | glycopeptide resistance gene cluster, vanY |
| Drug Class | glycopeptide antibiotic |
| Resistance Mechanism | antibiotic target alteration |
| Resistomes with Perfect Matches | Streptococcus agalactiaeg, Streptococcus anginosusg |
| Resistomes with Sequence Variants | Anaerococcus mediterraneensisg, Bacillus cereuswgs, Bacillus halotoleransg+wgs, Bacillus pumilusg+wgs, Bacillus subtilisg+wgs, Bacillus tequilensiswgs, Bacillus thuringiensisg+p+wgs, Brevibacillus laterosporusg+wgs, Clostridium botulinumg+wgs, Clostridium perfringensg+wgs, Clostridium sporogeneswgs, Enterocloster clostridioformiswgs, Erysipelatoclostridium ramosumwgs, Erysipelothrix rhusiopathiaeg, Gemella haemolysanswgs, Jeotgalibaca arthritidisg, Jeotgalibaca ciconiaeg, Lactococcus garvieaewgs, Listeria innocuag+wgs, Listeria monocytogeneswgs, Moraxella catarrhalisg+wgs, Paenibacillus mucilaginosusg+wgs, Parvimonas micrag+wgs, Ruthenibacterium lactatiformansg+wgs, Staphylococcus haemolyticuswgs, Staphylococcus hominisg+wgs, Streptococcus agalactiaeg, Streptococcus anginosusg, Streptococcus cristatusg+wgs, Streptococcus gordoniig+wgs, Streptococcus intermediusg+wgs, Streptococcus mutansg+wgs, Streptococcus sanguinisg+wgs, Streptococcus sobrinuswgs, Streptococcus suiswgs, Vibrio parahaemolyticuswgs |
| Classification | 12 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + antibiotic target alteration [Resistance Mechanism] + restructuring of bacterial cell wall conferring antibiotic resistance + determinant of antibiotic resistance + antibiotic molecule + glycopeptide antibiotic [Drug Class] + protein(s) conferring antibiotic resistance via molecular bypass + antibiotic resistance gene cluster, cassette, or operon + gene(s) or protein(s) associated with a glycopeptide resistance cluster + glycopeptide resistance gene cluster [AMR Gene Family] + vancomycin [Antibiotic] |
| Parent Term(s) | 2 ontology terms | Show |
| Publications | Boyd DA, et al. 2006. Antimicrob Agents Chemother 50(6): 2217-2221. VanG-type vancomycin-resistant Enterococcus faecalis strains isolated in Canada. (PMID 16723588) |
Prevalence of vanY gene in vanG cluster among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 414 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI | GRDI-AMR2 |
|---|---|---|---|---|---|
| Anaerococcus mediterraneensis | 100% | 0% | 0% | 0% | 0% |
| Bacillus cereus | 0% | 0% | 0.4% | 0% | 0% |
| Bacillus halotolerans | 90.91% | 0% | 97.3% | 0% | 0% |
| Bacillus pumilus | 100% | 0% | 100% | 0% | 0% |
| Bacillus subtilis | 31.54% | 0% | 32.08% | 0% | 0% |
| Bacillus tequilensis | 0% | 0% | 33.33% | 0% | 0% |
| Bacillus thuringiensis | 1.25% | 0.59% | 2.44% | 0% | 0% |
| Brevibacillus laterosporus | 50% | 0% | 26.47% | 0% | 0% |
| Clostridium botulinum | 28.36% | 0% | 16.58% | 0% | 0% |
| Clostridium perfringens | 2.5% | 0% | 3.67% | 0% | 0% |
| Clostridium sporogenes | 0% | 0% | 2.56% | 0% | 0% |
| Enterocloster clostridioformis | 0% | 0% | 4.65% | 0% | 0% |
| Erysipelatoclostridium ramosum | 0% | 0% | 8.14% | 0% | 0% |
| Erysipelothrix rhusiopathiae | 9.09% | 0% | 0% | 0% | 0% |
| Gemella haemolysans | 0% | 0% | 12.5% | 0% | 0% |
| Jeotgalibaca arthritidis | 100% | 0% | 0% | 0% | 0% |
| Jeotgalibaca ciconiae | 100% | 0% | 0% | 0% | 0% |
| Lactococcus garvieae | 0% | 0% | 8.89% | 0% | 0% |
| Listeria innocua | 5.88% | 0% | 2.26% | 0% | 0% |
| Listeria monocytogenes | 0% | 0% | 0.02% | 0% | 0% |
| Moraxella catarrhalis | 87.5% | 0% | 75.65% | 0% | 0% |
| Paenibacillus mucilaginosus | 100% | 0% | 100% | 0% | 0% |
| Parvimonas micra | 40% | 0% | 18.75% | 0% | 0% |
| Ruthenibacterium lactatiformans | 100% | 0% | 100% | 0% | 0% |
| Staphylococcus haemolyticus | 0% | 0% | 0.22% | 0% | 0% |
| Staphylococcus hominis | 93.75% | 0% | 92.68% | 0% | 0% |
| Streptococcus agalactiae | 1.87% | 0% | 0% | 0% | 0% |
| Streptococcus anginosus | 5.88% | 0% | 0% | 0% | 0% |
| Streptococcus cristatus | 100% | 0% | 94.29% | 0% | 0% |
| Streptococcus gordonii | 92.86% | 0% | 91.03% | 0% | 0% |
| Streptococcus intermedius | 57.14% | 0% | 38.64% | 0% | 0% |
| Streptococcus mutans | 100% | 0% | 100% | 0% | 0% |
| Streptococcus sanguinis | 100% | 0% | 87.63% | 0% | 0% |
| Streptococcus sobrinus | 0% | 0% | 10.2% | 0% | 0% |
| Streptococcus suis | 0% | 0% | 0.42% | 0% | 0% |
| Vibrio parahaemolyticus | 0% | 0% | 0.21% | 0% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 50
| Curator | Description | Most Recent Edit |
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