| Accession | ARO:3005008 |
| CARD Short Name | TxR |
| Definition | TxR is a putative transcription regulator that plays a role in conferring tetracycline resistance. It is required for proper functioning of Tet35. |
| AMR Gene Family | ATP-binding cassette (ABC) antibiotic efflux pump |
| Drug Class | tetracycline antibiotic |
| Resistance Mechanism | antibiotic efflux |
| Efflux Component | efflux pump complex or subunit conferring antibiotic resistance |
| Efflux Regulator | protein(s) and two-component regulatory system modulating antibiotic efflux |
| Resistomes with Sequence Variants | Vibrio alginolyticusg+wgs, Vibrio fluvialisg+wgs, Vibrio harveyig+wgs, Vibrio neocaledonicusg, Vibrio owensiiwgs, Vibrio parahaemolyticusg+wgs |
| Classification | 10 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + antibiotic molecule + determinant of antibiotic resistance + antibiotic efflux [Resistance Mechanism] + efflux pump complex or subunit conferring antibiotic resistance [Efflux Component] + tetracycline antibiotic [Drug Class] + protein(s) and two-component regulatory system modulating antibiotic efflux [Efflux Regulator] + ATP-binding cassette (ABC) antibiotic efflux pump [AMR Gene Family] + tetracycline [Antibiotic] |
| Parent Term(s) | 2 ontology terms | Show |
| Publications | Teo JW, et al. 2002. Antimicrob Agents Chemother 46(4): 1038-1045. Genetic determinants of tetracycline resistance in Vibrio harveyi. (PMID 11897587) |
Prevalence of TxR among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Vibrio alginolyticus | 6.17% | 0% | 9.13% | 0% |
| Vibrio fluvialis | 47.37% | 0% | 30.67% | 0% |
| Vibrio harveyi | 7.14% | 0% | 36% | 0% |
| Vibrio neocaledonicus | 50% | 0% | 0% | 0% |
| Vibrio owensii | 0% | 0% | 15.79% | 0% |
| Vibrio parahaemolyticus | 50% | 0% | 74.09% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 400