| Accession | ARO:3005166 |
| Synonym(s) | tetX1 |
| CARD Short Name | tet(X1) |
| Definition | Tetracycline resistance gene tet(X) ortholog described by Fang et al. 2020. |
| AMR Gene Family | tetracycline inactivation enzyme |
| Drug Class | tetracycline antibiotic |
| Resistance Mechanism | antibiotic inactivation |
| Resistomes with Sequence Variants | Bacteroides caccaewgs, Bacteroides fragilisg+wgs, Bacteroides ovatuswgs, Bacteroides thetaiotaomicrong+wgs, Parabacteroides distasonisg+wgs, Phocaeicola doreiwgs, Phocaeicola vulgatuswgs |
| Classification | 8 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + determinant of antibiotic resistance + antibiotic molecule + antibiotic inactivation [Resistance Mechanism] + antibiotic inactivation enzyme + hydroxylation of antibiotic conferring resistance + tetracycline antibiotic [Drug Class] |
| Parent Term(s) | 4 ontology terms | Show + confers_resistance_to_antibiotic tetracycline [Antibiotic] + tetracycline inactivation enzyme [AMR Gene Family] + confers_resistance_to_antibiotic minocycline [Antibiotic] + confers_resistance_to_antibiotic oxytetracycline [Antibiotic] |
| Publications | Fang LX, et al. 2020. Bioessays 42(8):e2000014 Emerging High-Level Tigecycline Resistance: Novel Tetracycline Destructases Spread via the Mobile Tet(X). (PMID 32567703) |
Prevalence of tet(X1) among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 414 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI | GRDI-AMR2 |
|---|---|---|---|---|---|
| Bacteroides caccae | 0% | 0% | 3.75% | 0% | 0% |
| Bacteroides fragilis | 3.85% | 0% | 2.65% | 0% | 0% |
| Bacteroides ovatus | 0% | 0% | 3.04% | 0% | 0% |
| Bacteroides thetaiotaomicron | 14.29% | 0% | 6.64% | 0% | 0% |
| Parabacteroides distasonis | 11.54% | 0% | 1.87% | 0% | 0% |
| Phocaeicola dorei | 0% | 0% | 6.25% | 0% | 0% |
| Phocaeicola vulgatus | 0% | 0% | 5.01% | 0% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 650
| Curator | Description | Most Recent Edit |
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