| Accession | ARO:3002666 |
| CARD Short Name | rmtF |
| Definition | RmtF is a 16S rRNA methyltransferase found in Pseudomonas aeruginosa which methylates G1405 of the 16S rRNA. It confers high level resistance to many aminoglycosides. |
| AMR Gene Family | 16S rRNA methyltransferase (G1405) |
| Drug Class | aminoglycoside antibiotic |
| Resistance Mechanism | antibiotic target alteration |
| Resistomes with Perfect Matches | Escherichia coliwgs, Klebsiella pneumoniaeg+p+wgs+gi, Klebsiella quasipneumoniaewgs, Pseudomonas aeruginosag |
| Resistomes with Sequence Variants | Escherichia coliwgs, Klebsiella pneumoniaeg+p+wgs+gi, Klebsiella quasipneumoniaewgs, Pseudomonas aeruginosag+wgs, Pseudomonas stutzeriwgs |
| Classification | 12 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + determinant of antibiotic resistance + antibiotic target alteration [Resistance Mechanism] + antibiotic target modifying enzyme + ribosomal alteration conferring antibiotic resistance + antibiotic molecule + antibiotic mixture + aminoglycoside antibiotic [Drug Class] + rRNA methyltransferase conferring antibiotic resistance + gentamicin [Antibiotic] + 16S ribosomal RNA methyltransferase |
| Parent Term(s) | 4 ontology terms | Show + 16S rRNA methyltransferase (G1405) [AMR Gene Family] + confers_resistance_to_antibiotic gentamicin A [Antibiotic] + confers_resistance_to_antibiotic kanamycin A [Antibiotic] + confers_resistance_to_antibiotic astromicin [Antibiotic] |
| Publications | Galimand M, et al. 2012. Antimicrob Agents Chemother 56(7): 3960-3962. RmtF, a new member of the aminoglycoside resistance 16S rRNA N7 G1405 methyltransferase family. (PMID 22547620) Rahman M, et al. 2015. Emerging Infect. Dis. 21(11):2059-62 RmtC and RmtF 16S rRNA Methyltransferase in NDM-1-Producing Pseudomonas aeruginosa. (PMID 26488937) |
Prevalence of rmtF among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Escherichia coli | 0% | 0% | 0.01% | 0% |
| Klebsiella pneumoniae | 0.53% | 0.78% | 1.46% | 0.95% |
| Klebsiella quasipneumoniae | 0% | 0% | 0.13% | 0% |
| Pseudomonas aeruginosa | 0.31% | 0% | 0.11% | 0% |
| Pseudomonas stutzeri | 0% | 0% | 0.76% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 450