| Accession | ARO:3002667 |
| CARD Short Name | rmtD |
| Definition | RmtD is a 16S rRNA methyltransferase found in Pseudomonas aeruginosa which methylates G1405 of the 16S rRNA. It confers high level resistance to many aminoglycosides. |
| AMR Gene Family | 16S rRNA methyltransferase (G1405) |
| Drug Class | aminoglycoside antibiotic |
| Resistance Mechanism | antibiotic target alteration |
| Resistomes with Perfect Matches | Klebsiella pneumoniaewgs, Klebsiella quasipneumoniaeg+p, Pseudomonas aeruginosag+wgs |
| Resistomes with Sequence Variants | Burkholderia cenocepaciawgs, Klebsiella pneumoniaewgs, Klebsiella quasipneumoniaeg+p, Pseudomonas aeruginosag+wgs+gi |
| Classification | 12 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + determinant of antibiotic resistance + antibiotic target alteration [Resistance Mechanism] + antibiotic target modifying enzyme + ribosomal alteration conferring antibiotic resistance + antibiotic molecule + antibiotic mixture + rRNA methyltransferase conferring antibiotic resistance + aminoglycoside antibiotic [Drug Class] + gentamicin [Antibiotic] + 16S ribosomal RNA methyltransferase |
| Parent Term(s) | 5 ontology terms | Show + confers_resistance_to_antibiotic amikacin [Antibiotic] + confers_resistance_to_antibiotic tobramycin [Antibiotic] + confers_resistance_to_antibiotic arbekacin [Antibiotic] + confers_resistance_to_antibiotic gentamicin A [Antibiotic] + 16S rRNA methyltransferase (G1405) [AMR Gene Family] |
| Publications | Yamane K, et al. 2008. J Antimicrob Chemother 61(3): 746-747. 16S ribosomal RNA methylase RmtD produced by Klebsiella pneumoniae in Brazil. (PMID 18222955) Doi Y, et al. 2007. Antimicrob. Agents Chemother. 51(3):852-6 Coproduction of novel 16S rRNA methylase RmtD and metallo-beta-lactamase SPM-1 in a panresistant Pseudomonas aeruginosa isolate from Brazil. (PMID 17158944) |
Prevalence of rmtD among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Burkholderia cenocepacia | 0% | 0% | 0.88% | 0% |
| Escherichia coli | 0% | 0% | 0% | 0% |
| Klebsiella pneumoniae | 0% | 0% | 0.03% | 0% |
| Klebsiella quasipneumoniae | 0.84% | 0.21% | 0% | 0% |
| Pseudomonas aeruginosa | 0.77% | 0% | 0.51% | 1.39% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 450