GOB-11

Accession ARO:3004803
CARD Short NameGOB-11
DefinitionGOB-11 is a class B beta-lactamase gene found in Chryseobacterium meningosepticum.
AMR Gene FamilyGOB beta-lactamase
Drug Classcephalosporin, penam, carbapenem
Resistance Mechanismantibiotic inactivation
Resistomes with Perfect MatchesElizabethkingia miricolawgs
Resistomes with Sequence VariantsElizabethkingia miricolawgs
Classification16 ontology terms | Show
Parent Term(s)1 ontology terms | Show
+ GOB beta-lactamase [AMR Gene Family]
Publications

Yum JH, et al. 2010. J Microbiol 48(3): 358-364. Genetic diversity of chromosomal metallo-beta-lactamase genes in clinical isolates of Elizabethkingia meningoseptica from Korea. (PMID 20571954)

Resistomes

Prevalence of GOB-11 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).

Prevalence: protein homolog model (view sequences)

SpeciesNCBI ChromosomeNCBI PlasmidNCBI WGSNCBI GI
Elizabethkingia miricola0%0%4.35%0%
Show Perfect Only


Detection Models

Model Type: protein homolog model

Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.

Bit-score Cut-off (blastP): 500


>gb|AAT68578.1|+|GOB-11 [Elizabethkingia meningoseptica]
MRNFATLFFLSACLSLSLNAQVVKEPENMPKEWNQTYEPFRIAGNLYYVGTYDLASYLIVTDKGNILINTGTAESLTIIKGNIQKLGFNY
KDIKVLLLTQAHYDHTGALEDFKTETGAKFYADKADADVLKTGGKSDYELGKYGVTFKPITPDRTLKDQDKITLGNTTLTLLHHPGHTKG
SCSFIFETKDEKRKYRVLIANMPSIIVDKKFSEVAAYPNIQSDYAYTFGAMKKLDFDLWVASHASQFDLHEKRKEGDPYNPQLFMDKQSY
FQNLNDLEKSYLDKIKKDSQDK


>gb|AY647248.1|+|1-879|GOB-11 [Elizabethkingia meningoseptica]
ATGAGAAATTTTGCTACACTGTTTTTTTTATCAGCTTGTTTGAGTTTAAGTTTGAATGCTCAGGTAGTAAAAGAACCTGAGAATATGCCT
AAAGAATGGAATCAGACTTATGAACCATTCAGAATTGCAGGGAACCTATATTACGTAGGAACCTATGATTTGGCTTCTTACCTTATTGTG
ACAGACAAAGGCAATATTCTTATTAATACAGGAACAGCAGAATCGCTTACAATAATAAAAGGCAATATTCAAAAGCTGGGGTTTAATTAT
AAAGACATTAAGGTCTTGCTGCTTACCCAGGCTCATTATGACCATACAGGTGCGTTAGAGGATTTTAAAACAGAAACCGGTGCAAAATTC
TATGCAGATAAAGCAGATGCTGATGTCCTGAAAACAGGGGGGAAGTCCGATTATGAATTGGGAAAATATGGTGTGACATTTAAACCTATT
ACTCCGGATAGAACGTTAAAAGATCAGGATAAAATAACACTGGGAAATACAACCCTGACTTTGCTTCATCACCCGGGACATACAAAAGGT
TCCTGCAGTTTTATTTTTGAAACAAAAGACGAGAAGAGAAAGTATAGAGTTCTGATAGCTAATATGCCCTCTATTATTGTTGATAAGAAA
TTTTCTGAAGTTGCAGCATATCCGAATATTCAGTCCGATTATGCTTATACCTTTGGTGCAATGAAAAAGCTTGATTTTGACCTTTGGGTG
GCATCGCATGCAAGTCAGTTCGATCTGCATGAAAAACGTAAAGAAGGAGATCCATACAATCCACAATTGTTTATGGATAAGCAAAGCTAT
TTCCAAAACCTTAATGATTTGGAGAAAAGCTATCTCGACAAAATAAAAAAAGATTCCCAAGATAAATAA