| Accession | ARO:3002271 |
| CARD Short Name | VIM-1 |
| Definition | VIM-1 is a beta-lactamase found in Pseudomonas spp. |
| AMR Gene Family | VIM beta-lactamase |
| Drug Class | carbapenem, cephalosporin, penem, penam, cephamycin |
| Resistance Mechanism | antibiotic inactivation |
| Resistomes with Perfect Matches | Citrobacter amalonaticuswgs, Citrobacter freundiip+wgs, Citrobacter portucalensiswgs, Enterobacter asburiaewgs, Enterobacter cloacaep+wgs, Enterobacter hormaecheip+wgs, Enterobacter kobeip+wgs, Enterobacter roggenkampiiwgs, Escherichia colip+wgs, Klebsiella aerogenesp+wgs, Klebsiella michiganensisp+wgs, Klebsiella oxytocap, Klebsiella pneumoniaeg+p+wgs+gi, Klebsiella quasipneumoniaep+wgs, Leclercia adecarboxylatag, Proteus mirabiliswgs, Providencia rettgeriwgs, Providencia stuartiiwgs, Pseudomonas aeruginosap+wgs, Pseudomonas monteiliip+wgs, Pseudomonas putidap+wgs, Raoultella planticolawgs, Salmonella entericawgs, Serratia marcescenswgs |
| Resistomes with Sequence Variants | Citrobacter amalonaticuswgs, Citrobacter freundiip+wgs, Citrobacter portucalensiswgs, Enterobacter asburiaewgs, Enterobacter cloacaep+wgs, Enterobacter hormaecheip+wgs, Enterobacter kobeip+wgs, Enterobacter roggenkampiiwgs, Escherichia colip+wgs, Klebsiella aerogenesp+wgs, Klebsiella michiganensisp+wgs, Klebsiella oxytocap, Klebsiella pneumoniaeg+p+wgs+gi, Klebsiella quasipneumoniaep+wgs, Leclercia adecarboxylatag+p, Proteus mirabiliswgs, Providencia rettgeriwgs, Providencia stuartiiwgs, Pseudomonas aeruginosap+wgs, Pseudomonas monteiliip+wgs, Pseudomonas putidap+wgs, Raoultella planticolawgs, Salmonella entericawgs, Serratia marcescenswgs |
| Classification | 18 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + antibiotic inactivation [Resistance Mechanism] + determinant of antibiotic resistance + antibiotic molecule + antibiotic inactivation enzyme + hydrolysis of antibiotic conferring resistance + beta-lactam antibiotic + beta-lactamase + hydrolysis of beta-lactam antibiotic by metallo-beta-lactamase + cephem + class B (metallo-) beta-lactamase + subclass B1 (metallo-) beta-lactamase + carbapenem [Drug Class] + cephalosporin [Drug Class] + penem [Drug Class] + penam [Drug Class] + cephamycin [Drug Class] |
| Parent Term(s) | 1 ontology terms | Show + VIM beta-lactamase [AMR Gene Family] |
| Sub-Term(s) | 5 ontology terms | Show + L-captopril [Adjuvant] is_small_molecule_inhibitor + D-captopril [Adjuvant] is_small_molecule_inhibitor + thiorphan [Adjuvant] is_small_molecule_inhibitor + tiopronin [Adjuvant] is_small_molecule_inhibitor + dimercaprol [Adjuvant] is_small_molecule_inhibitor |
| Publications | Lee MF, et al. 2008. Int J Antimicrob Agents 32(6): 475-480. Molecular characterisation of the metallo-beta-lactamase genes in imipenem-resistant Gram-negative bacteria from a university hospital in southern Taiwan. (PMID 18804966) |
Prevalence of VIM-1 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Citrobacter amalonaticus | 0% | 0% | 1.82% | 0% |
| Citrobacter freundii | 0% | 1.23% | 3.48% | 0% |
| Citrobacter portucalensis | 0% | 0% | 3.6% | 0% |
| Enterobacter asburiae | 0% | 0% | 2.37% | 0% |
| Enterobacter cloacae | 0% | 1.12% | 0.96% | 0% |
| Enterobacter hormaechei | 0% | 2.64% | 1.73% | 0% |
| Enterobacter kobei | 0% | 0.69% | 0.44% | 0% |
| Enterobacter roggenkampii | 0% | 0% | 1.8% | 0% |
| Escherichia coli | 0% | 0.04% | 0.08% | 0% |
| Klebsiella aerogenes | 0% | 1.09% | 0.28% | 0% |
| Klebsiella michiganensis | 0% | 0.57% | 1.33% | 0% |
| Klebsiella oxytoca | 0% | 2.05% | 0% | 0% |
| Klebsiella pneumoniae | 0.06% | 0.2% | 0.47% | 0.95% |
| Klebsiella quasipneumoniae | 0% | 0.21% | 0.53% | 0% |
| Leclercia adecarboxylata | 7.14% | 4.76% | 0% | 0% |
| Proteus mirabilis | 0% | 0% | 0.5% | 0% |
| Providencia rettgeri | 0% | 0% | 0.64% | 0% |
| Providencia stuartii | 0% | 0% | 2.27% | 0% |
| Pseudomonas aeruginosa | 0% | 0.58% | 0.36% | 0% |
| Pseudomonas monteilii | 0% | 14.29% | 4.76% | 0% |
| Pseudomonas putida | 0% | 8% | 0.53% | 0% |
| Raoultella planticola | 0% | 0% | 2.56% | 0% |
| Salmonella enterica | 0% | 0% | 0.01% | 0% |
| Serratia marcescens | 0% | 0% | 1.44% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 400