| Accession | ARO:3004508 |
| CARD Short Name | MCR-3.9 |
| Definition | An MCR-3 polymyxin (incl. colistin) resistance gene variant isolated from an Aeromonas isolate. |
| AMR Gene Family | MCR phosphoethanolamine transferase |
| Drug Class | peptide antibiotic |
| Resistance Mechanism | antibiotic target alteration |
| Resistomes with Perfect Matches | Aeromonas hydrophilag |
| Resistomes with Sequence Variants | Aeromonas hydrophilag |
| Classification | 14 ontology terms | Show + process or component of antibiotic biology or chemistry + antibiotic molecule + mechanism of antibiotic resistance + peptide antibiotic [Drug Class] + lipopeptide antibiotic + antibiotic target alteration [Resistance Mechanism] + polymyxin antibiotic + charge alteration conferring antibiotic resistance + determinant of antibiotic resistance + colistin + gene altering cell wall charge + colistin A [Antibiotic] + colistin B [Antibiotic] + phosphoethanolamine transferase conferring colistin resistance |
| Parent Term(s) | 4 ontology terms | Show + evolutionary_variant_of MCR-3.1 + MCR phosphoethanolamine transferase [AMR Gene Family] + confers_resistance_to_antibiotic colistin A [Antibiotic] + confers_resistance_to_antibiotic colistin B [Antibiotic] |
| Publications | Eichhorn I, et al. 2018. J. Antimicrob. Chemother. 73(5):1217-1221 Identification of novel variants of the colistin resistance gene mcr-3 in Aeromonas spp. from the national resistance monitoring programme GERM-Vet and from diagnostic submissions. (PMID 29394397) |
Prevalence of MCR-3.9 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Aeromonas hydrophila | 1.54% | 0% | 0% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 1000