| Accession | ARO:3004826 |
| CARD Short Name | LAP-2 |
| Definition | LAP-2 is an Ambler Class A beta-lactamase gene. |
| AMR Gene Family | LAP beta-lactamase |
| Drug Class | penam, penem, cephalosporin |
| Resistance Mechanism | antibiotic inactivation |
| Resistomes with Perfect Matches | Citrobacter freundiiwgs, Cronobacter sakazakiip, Enterobacter asburiaewgs, Enterobacter chengduensisp, Enterobacter cloacaep+wgs, Enterobacter hormaecheig+p+wgs, Enterobacter kobeiwgs, Enterobacter roggenkampiip+wgs, Escherichia albertiip, Escherichia colig+p+wgs, Escherichia fergusoniiwgs, Klebsiella aerogenesp+wgs, Klebsiella michiganensiswgs, Klebsiella pneumoniaeg+p+wgs, Klebsiella quasipneumoniaep+wgs, Leclercia adecarboxylatap+wgs, Morganella morganiiwgs, Raoultella planticolawgs, Salmonella entericag+p+wgs, Serratia marcescensg+wgs, Shigella flexnerip+wgs, Shigella sonneiwgs |
| Resistomes with Sequence Variants | Citrobacter freundiiwgs, Cronobacter sakazakiip, Enterobacter asburiaewgs, Enterobacter chengduensisp, Enterobacter cloacaep+wgs, Enterobacter hormaecheig+p+wgs, Enterobacter kobeiwgs, Enterobacter roggenkampiip+wgs, Escherichia albertiip, Escherichia colig+p+wgs, Escherichia fergusoniiwgs, Klebsiella aerogenesp+wgs, Klebsiella michiganensiswgs, Klebsiella pneumoniaeg+p+wgs, Klebsiella quasipneumoniaep+wgs, Leclercia adecarboxylatap+wgs, Morganella morganiiwgs, Raoultella planticolawgs, Salmonella entericag+p+wgs, Serratia marcescensg+wgs, Shigella flexnerip+wgs, Shigella sonneiwgs |
| Classification | 15 ontology terms | Show + process or component of antibiotic biology or chemistry + mechanism of antibiotic resistance + antibiotic molecule + antibiotic inactivation [Resistance Mechanism] + determinant of antibiotic resistance + antibiotic inactivation enzyme + beta-lactam antibiotic + hydrolysis of antibiotic conferring resistance + beta-lactamase + cephem + hydrolysis of beta-lactam antibiotic by serine beta-lactamase + penam [Drug Class] + penem [Drug Class] + cephalosporin [Drug Class] + class A beta-lactamase |
| Parent Term(s) | 8 ontology terms | Show + LAP beta-lactamase [AMR Gene Family] + confers_resistance_to_antibiotic cefepime [Antibiotic] + confers_resistance_to_antibiotic cefuroxime [Antibiotic] + confers_resistance_to_antibiotic amoxicillin [Antibiotic] + confers_resistance_to_antibiotic piperacillin [Antibiotic] + confers_resistance_to_antibiotic benzylpenicillin [Antibiotic] + confers_resistance_to_antibiotic cefalotin [Antibiotic] + confers_resistance_to_antibiotic ticarcillin [Antibiotic] |
| Publications | Huang Z, et al. 2008. J. Hosp. Infect. 70(1):95-6 A novel beta-lactamase gene, LAP-2, produced by an Enterobacter cloacae clinical isolate in China. (PMID 18550213) |
Prevalence of LAP-2 among the sequenced genomes, plasmids, and whole-genome shotgun assemblies available at NCBI or IslandViewer for 413 important pathogens (see methodological details and complete list of analyzed pathogens). Values reflect percentage of genomes, plasmids, genome islands, or whole-genome shotgun assemblies that have at least one hit to the AMR detection model. Default view includes percentages calculated based on Perfect plus Strict RGI hits. Select the checkbox to view percentages based on only Perfect matches to AMR reference sequences curated in CARD (note: this excludes resistance via mutation as references in protein variant models are often wild-type, sensitive sequences).
| Species | NCBI Chromosome | NCBI Plasmid | NCBI WGS | NCBI GI |
|---|---|---|---|---|
| Citrobacter freundii | 0% | 0% | 0.77% | 0% |
| Cronobacter sakazakii | 0% | 2.56% | 0% | 0% |
| Enterobacter asburiae | 0% | 0% | 0.79% | 0% |
| Enterobacter chengduensis | 0% | 100% | 0% | 0% |
| Enterobacter cloacae | 0% | 1.68% | 2.56% | 0% |
| Enterobacter hormaechei | 0.72% | 1.22% | 3.88% | 0% |
| Enterobacter kobei | 0% | 0% | 0.87% | 0% |
| Enterobacter roggenkampii | 0% | 1.45% | 1.44% | 0% |
| Escherichia albertii | 0% | 0.56% | 0% | 0% |
| Escherichia coli | 0.02% | 0.11% | 0.25% | 0% |
| Escherichia fergusonii | 0% | 0% | 1.09% | 0% |
| Klebsiella aerogenes | 0% | 2.17% | 1.13% | 0% |
| Klebsiella michiganensis | 0% | 0% | 0.8% | 0% |
| Klebsiella pneumoniae | 0.18% | 1.77% | 3.28% | 0% |
| Klebsiella quasipneumoniae | 0% | 1.06% | 7.63% | 0% |
| Leclercia adecarboxylata | 0% | 4.76% | 9.3% | 0% |
| Morganella morganii | 0% | 0% | 1.23% | 0% |
| Raoultella planticola | 0% | 0% | 2.56% | 0% |
| Salmonella enterica | 0.5% | 1.04% | 0.34% | 0% |
| Serratia marcescens | 3.03% | 0% | 4.85% | 0% |
| Shigella flexneri | 0% | 1.2% | 0.16% | 0% |
| Shigella sonnei | 0% | 0% | 0.22% | 0% |
Model Type: protein homolog model
Model Definition: Protein Homolog Models (PHM) detect protein sequences based on their similarity to a curated reference sequence, using curated BLASTP bitscore cut-offs. Protein Homolog Models apply to all genes that confer resistance through their presence in an organism, such as the presence of a beta-lactamase gene on a plasmid. PHMs include a reference sequence and a bitscore cut-off for detection using BLASTP. A Perfect RGI match is 100% identical to the reference protein sequence along its entire length, a Strict RGI match is not identical but the bit-score of the matched sequence is greater than the curated BLASTP bit-score cutoff, Loose RGI matches have a bit-score less than the curated BLASTP bit-score cut-off.
Bit-score Cut-off (blastP): 585